Variant report

Variant	rs7641242
Chromosome Location	chr3:111290412-111290413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11919658	1.00[EUR][1000 genomes]
rs11925588	1.00[AMR][1000 genomes]
rs11928127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929008	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34059586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58085859	1.00[AMR][1000 genomes]
rs58195592	1.00[AMR][1000 genomes]
rs60275470	1.00[EUR][1000 genomes]
rs6766880	1.00[EUR][1000 genomes]
rs6802504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72939542	1.00[AMR][1000 genomes]
rs72939590	1.00[EUR][1000 genomes]
rs72939593	1.00[EUR][1000 genomes]
rs72939597	1.00[EUR][1000 genomes]
rs72947140	1.00[EUR][1000 genomes]
rs73855128	1.00[AMR][1000 genomes]
rs9871681	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111286400-111293200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:111287200-111290600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:111287800-111293000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:111288400-111296000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr3:111288600-111296600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:111288800-111291200	Genic enhancers	Primary T cells fromperipheralblood	blood
7	chr3:111289200-111291200	Strong transcription	Primary T cells from cord blood	blood
8	chr3:111289200-111291200	Strong transcription	Thymus	Thymus
9	chr3:111289400-111291200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:111289400-111292200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:111289600-111291000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:111289600-111292000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:111289800-111290800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr3:111290000-111294200	Strong transcription	Dnd41	blood
15	chr3:111290000-111295000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:111290000-111297200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:111290200-111290600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:111290200-111291000	Strong transcription	Fetal Thymus	thymus
19	chr3:111290400-111291800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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