Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11925588	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682241	1.00[EUR][1000 genomes]
rs58085859	1.00[AMR][1000 genomes]
rs58195592	1.00[AMR][1000 genomes]
rs58423117	1.00[EUR][1000 genomes]
rs6437956	1.00[EUR][1000 genomes]
rs6766880	1.00[EUR][1000 genomes]
rs6795720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937963	1.00[EUR][1000 genomes]
rs72937977	1.00[EUR][1000 genomes]
rs72937981	1.00[EUR][1000 genomes]
rs72937998	1.00[EUR][1000 genomes]
rs72939542	1.00[AMR][1000 genomes]
rs72939908	1.00[EUR][1000 genomes]
rs73855128	1.00[AMR][1000 genomes]
rs7637601	1.00[EUR][1000 genomes]
rs7641242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641469	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111090400-111093200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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