Variant report

Variant	rs4682241
Chromosome Location	chr3:110903856-110903857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1381829	1.00[EUR][1000 genomes]
rs1462791	1.00[EUR][1000 genomes]
rs1462796	1.00[EUR][1000 genomes]
rs1580287	1.00[EUR][1000 genomes]
rs1599665	1.00[EUR][1000 genomes]
rs1960628	1.00[EUR][1000 genomes]
rs1993801	1.00[EUR][1000 genomes]
rs34059586	1.00[EUR][1000 genomes]
rs3733175	1.00[AMR][1000 genomes]
rs4593059	1.00[EUR][1000 genomes]
rs4682220	1.00[EUR][1000 genomes]
rs4682233	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682237	1.00[EUR][1000 genomes]
rs4682239	1.00[AMR][1000 genomes]
rs58106260	1.00[EUR][1000 genomes]
rs58423117	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59248935	1.00[AMR][1000 genomes]
rs61035297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437956	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765553	1.00[EUR][1000 genomes]
rs6795720	1.00[EUR][1000 genomes]
rs6804912	0.89[AMR][1000 genomes]
rs72935984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937908	1.00[EUR][1000 genomes]
rs72937909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937912	1.00[EUR][1000 genomes]
rs72937914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937920	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937925	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937928	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937936	1.00[EUR][1000 genomes]
rs72937940	1.00[AMR][1000 genomes]
rs72937946	1.00[AMR][1000 genomes]
rs72937954	1.00[AMR][1000 genomes]
rs72937963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937977	1.00[EUR][1000 genomes]
rs72937981	1.00[EUR][1000 genomes]
rs72937987	0.89[AMR][1000 genomes]
rs72937998	1.00[EUR][1000 genomes]
rs72939908	1.00[EUR][1000 genomes]
rs7619492	1.00[EUR][1000 genomes]
rs7628011	1.00[EUR][1000 genomes]
rs7628921	1.00[EUR][1000 genomes]
rs7634788	1.00[EUR][1000 genomes]
rs7637601	1.00[EUR][1000 genomes]
rs7637704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641469	1.00[EUR][1000 genomes]
rs7650020	1.00[EUR][1000 genomes]
rs898974	1.00[EUR][1000 genomes]
rs9830162	1.00[EUR][1000 genomes]
rs9835919	1.00[EUR][1000 genomes]
rs9856917	1.00[EUR][1000 genomes]
rs9869379	1.00[EUR][1000 genomes]
rs990256	1.00[EUR][1000 genomes]
rs992130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110832400-110911200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:110835600-110929600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:110842600-110911200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:110847000-110911400	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:110853000-110919600	Weak transcription	Fetal Brain Male	brain
6	chr3:110853200-110911000	Weak transcription	NH-A	brain
7	chr3:110869400-110929000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:110871000-110914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:110872200-110913800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:110872600-110918800	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:110874200-110912000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:110874400-110911800	Weak transcription	Left Ventricle	heart
13	chr3:110874800-110913000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:110881000-110928000	Weak transcription	Osteobl	bone
15	chr3:110883800-110908400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:110890200-110913200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:110890800-110919800	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:110892000-110915800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:110892400-110911200	Weak transcription	Liver	Liver
20	chr3:110892400-110912800	Weak transcription	HepG2	liver
21	chr3:110892800-110910000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:110892800-110911000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:110892800-110911000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:110892800-110911200	Weak transcription	Adipose Nuclei	Adipose
25	chr3:110892800-110911600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:110893000-110910000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:110893000-110911400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:110893000-110916200	Weak transcription	A549	lung
29	chr3:110893200-110908000	Weak transcription	Placenta	Placenta
30	chr3:110893200-110912200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:110893200-110912200	Weak transcription	NHDF-Ad	bronchial
32	chr3:110893400-110911400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:110893600-110904000	Weak transcription	Fetal Lung	lung
34	chr3:110894000-110922800	Weak transcription	Gastric	stomach
35	chr3:110894000-110924000	Weak transcription	Fetal Stomach	stomach
36	chr3:110894000-110934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:110894200-110908000	Weak transcription	Fetal Intestine Large	intestine
38	chr3:110894200-110911400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:110894200-110913800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:110894200-110914200	Weak transcription	Aorta	Aorta
41	chr3:110894200-110924800	Weak transcription	Fetal Intestine Small	intestine
42	chr3:110894200-110925600	Weak transcription	NHLF	lung
43	chr3:110894200-110929600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:110894400-110908800	Weak transcription	Ovary	ovary
45	chr3:110894600-110904000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:110898400-110907800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:110898400-110910400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:110898400-110911400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr3:110898800-110907000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:110899200-110935200	Weak transcription	Lung	lung

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