Variant report

Variant	rs7637601
Chromosome Location	chr3:110933821-110933822
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11926786	0.85[AMR][1000 genomes]
rs28479347	0.87[AMR][1000 genomes]
rs34059586	1.00[EUR][1000 genomes]
rs4682233	1.00[EUR][1000 genomes]
rs4682236	1.00[EUR][1000 genomes]
rs4682237	1.00[EUR][1000 genomes]
rs4682241	1.00[EUR][1000 genomes]
rs58106260	1.00[EUR][1000 genomes]
rs58423117	1.00[EUR][1000 genomes]
rs61035297	1.00[EUR][1000 genomes]
rs6437956	1.00[EUR][1000 genomes]
rs6765553	1.00[EUR][1000 genomes]
rs6795720	1.00[EUR][1000 genomes]
rs72935984	1.00[EUR][1000 genomes]
rs72935992	1.00[EUR][1000 genomes]
rs72937908	1.00[EUR][1000 genomes]
rs72937909	1.00[EUR][1000 genomes]
rs72937912	1.00[EUR][1000 genomes]
rs72937914	1.00[EUR][1000 genomes]
rs72937920	1.00[EUR][1000 genomes]
rs72937925	1.00[EUR][1000 genomes]
rs72937928	1.00[EUR][1000 genomes]
rs72937936	1.00[EUR][1000 genomes]
rs72937963	1.00[EUR][1000 genomes]
rs72937977	1.00[EUR][1000 genomes]
rs72937981	1.00[EUR][1000 genomes]
rs72937998	1.00[EUR][1000 genomes]
rs72939908	1.00[EUR][1000 genomes]
rs72939910	1.00[AMR][1000 genomes]
rs7619492	1.00[EUR][1000 genomes]
rs7628011	1.00[EUR][1000 genomes]
rs7628921	1.00[EUR][1000 genomes]
rs7637704	1.00[EUR][1000 genomes]
rs7641469	1.00[EUR][1000 genomes]
rs7650020	1.00[EUR][1000 genomes]
rs898974	1.00[EUR][1000 genomes]
rs9835919	1.00[EUR][1000 genomes]
rs9869379	1.00[EUR][1000 genomes]
rs990256	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv3945	chr3:110922029-110967244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110894000-110934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:110899200-110935200	Weak transcription	Lung	lung
3	chr3:110915000-110934200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:110920000-110945800	Weak transcription	HSMMtube	muscle
5	chr3:110929000-110934000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:110929400-110934200	Weak transcription	NHDF-Ad	bronchial
7	chr3:110930200-110934000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:110930400-110934000	Weak transcription	Osteobl	bone
9	chr3:110930400-110934200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:110930400-110961000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:110933000-110934400	Weak transcription	Pancreas	Pancrea

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