Variant report

Variant	rs72937908
Chromosome Location	chr3:110824605-110824606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11929276	1.00[EUR][1000 genomes]
rs1381827	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1381829	1.00[EUR][1000 genomes]
rs1462791	1.00[EUR][1000 genomes]
rs1462792	1.00[EUR][1000 genomes]
rs1462796	1.00[EUR][1000 genomes]
rs1462806	1.00[EUR][1000 genomes]
rs1580287	1.00[EUR][1000 genomes]
rs1599665	1.00[EUR][1000 genomes]
rs1960628	1.00[EUR][1000 genomes]
rs1993801	1.00[EUR][1000 genomes]
rs2061682	1.00[EUR][1000 genomes]
rs2169566	1.00[EUR][1000 genomes]
rs4305447	1.00[EUR][1000 genomes]
rs4593059	1.00[EUR][1000 genomes]
rs4682216	1.00[EUR][1000 genomes]
rs4682218	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4682220	1.00[EUR][1000 genomes]
rs4682233	1.00[EUR][1000 genomes]
rs4682236	1.00[EUR][1000 genomes]
rs4682237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682241	1.00[EUR][1000 genomes]
rs58106260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58423117	1.00[EUR][1000 genomes]
rs61035297	1.00[EUR][1000 genomes]
rs6437932	1.00[EUR][1000 genomes]
rs6437935	1.00[EUR][1000 genomes]
rs6437936	1.00[EUR][1000 genomes]
rs6437956	1.00[EUR][1000 genomes]
rs6765553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935984	1.00[EUR][1000 genomes]
rs72935992	1.00[EUR][1000 genomes]
rs72937909	1.00[EUR][1000 genomes]
rs72937912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937914	1.00[EUR][1000 genomes]
rs72937920	1.00[EUR][1000 genomes]
rs72937925	1.00[EUR][1000 genomes]
rs72937928	1.00[EUR][1000 genomes]
rs72937936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937963	1.00[EUR][1000 genomes]
rs72937977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937998	1.00[EUR][1000 genomes]
rs72939908	1.00[EUR][1000 genomes]
rs7609772	1.00[EUR][1000 genomes]
rs7619492	1.00[EUR][1000 genomes]
rs7628011	1.00[EUR][1000 genomes]
rs7628921	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7634788	1.00[EUR][1000 genomes]
rs7637601	1.00[EUR][1000 genomes]
rs7637704	1.00[EUR][1000 genomes]
rs7641469	1.00[EUR][1000 genomes]
rs7650020	1.00[EUR][1000 genomes]
rs898974	1.00[EUR][1000 genomes]
rs931024	1.00[EUR][1000 genomes]
rs9826523	1.00[EUR][1000 genomes]
rs9830162	1.00[EUR][1000 genomes]
rs9835919	1.00[EUR][1000 genomes]
rs9856917	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9869379	1.00[EUR][1000 genomes]
rs990256	1.00[EUR][1000 genomes]
rs992130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv591276	chr3:110822496-110854196	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv877338	chr3:110824425-110860188	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110805000-110833600	Weak transcription	NHDF-Ad	bronchial
2	chr3:110816000-110827200	Weak transcription	Ovary	ovary
3	chr3:110816000-110837600	Weak transcription	Fetal Stomach	stomach
4	chr3:110816000-110873800	Weak transcription	Left Ventricle	heart
5	chr3:110816000-110893400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:110817400-110855200	Weak transcription	Pancreas	Pancrea
7	chr3:110817600-110837600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:110819200-110857200	Weak transcription	NHLF	lung
9	chr3:110820000-110827400	Weak transcription	Small Intestine	intestine
10	chr3:110822800-110826400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:110823400-110825800	Weak transcription	Liver	Liver
12	chr3:110823400-110826200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:110823400-110826200	Weak transcription	Fetal Lung	lung
14	chr3:110823400-110827600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:110823400-110838000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:110823400-110838000	Weak transcription	Fetal Intestine Small	intestine
17	chr3:110824200-110825800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:110824200-110826400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:110824200-110826600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:110824200-110827600	Enhancers	Dnd41	blood
21	chr3:110824200-110828200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr3:110824200-110832200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:110824400-110826800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr3:110824400-110827800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr3:110824600-110825000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:110824600-110825200	ZNF genes & repeats	Psoas Muscle	Psoas
27	chr3:110824600-110826600	Enhancers	HUES6 Cell Line	embryonic stem cell

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