Variant report

Variant	rs1580287
Chromosome Location	chr3:110680014-110680015
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1020891	1.00[EUR][1000 genomes]
rs1037960	1.00[EUR][1000 genomes]
rs1160101	1.00[EUR][1000 genomes]
rs11929276	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1350928	1.00[EUR][1000 genomes]
rs1350931	1.00[EUR][1000 genomes]
rs1381827	1.00[EUR][1000 genomes]
rs1381829	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1462791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1462792	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1462796	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1462806	1.00[EUR][1000 genomes]
rs1599575	1.00[EUR][1000 genomes]
rs1599577	1.00[EUR][1000 genomes]
rs1599665	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1841734	1.00[EUR][1000 genomes]
rs1903758	1.00[EUR][1000 genomes]
rs1960628	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1975901	1.00[EUR][1000 genomes]
rs1993801	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2054376	1.00[EUR][1000 genomes]
rs2061682	1.00[EUR][1000 genomes]
rs2169566	1.00[EUR][1000 genomes]
rs3957571	1.00[EUR][1000 genomes]
rs3957572	1.00[EUR][1000 genomes]
rs4305447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4549301	1.00[EUR][1000 genomes]
rs4593059	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682021	1.00[EUR][1000 genomes]
rs4682216	1.00[EUR][1000 genomes]
rs4682218	1.00[EUR][1000 genomes]
rs4682220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682233	1.00[EUR][1000 genomes]
rs4682236	1.00[EUR][1000 genomes]
rs4682237	1.00[EUR][1000 genomes]
rs4682241	1.00[EUR][1000 genomes]
rs58106260	1.00[EUR][1000 genomes]
rs58423117	1.00[EUR][1000 genomes]
rs61035297	1.00[EUR][1000 genomes]
rs6437932	1.00[EUR][1000 genomes]
rs6437935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437956	1.00[EUR][1000 genomes]
rs6765553	1.00[EUR][1000 genomes]
rs6794368	1.00[EUR][1000 genomes]
rs72935984	1.00[EUR][1000 genomes]
rs72935992	1.00[EUR][1000 genomes]
rs72937908	1.00[EUR][1000 genomes]
rs72937909	1.00[EUR][1000 genomes]
rs72937912	1.00[EUR][1000 genomes]
rs72937914	1.00[EUR][1000 genomes]
rs72937920	1.00[EUR][1000 genomes]
rs72937925	1.00[EUR][1000 genomes]
rs72937928	1.00[EUR][1000 genomes]
rs72937936	1.00[EUR][1000 genomes]
rs72937963	1.00[EUR][1000 genomes]
rs72937977	1.00[EUR][1000 genomes]
rs72937981	1.00[EUR][1000 genomes]
rs7609772	1.00[EUR][1000 genomes]
rs7618482	1.00[EUR][1000 genomes]
rs7619492	1.00[EUR][1000 genomes]
rs7619978	1.00[EUR][1000 genomes]
rs7628011	1.00[EUR][1000 genomes]
rs7628921	1.00[EUR][1000 genomes]
rs7634788	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7637704	1.00[EUR][1000 genomes]
rs7642037	1.00[EUR][1000 genomes]
rs7644614	1.00[EUR][1000 genomes]
rs7650020	1.00[EUR][1000 genomes]
rs898974	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9288915	1.00[EUR][1000 genomes]
rs931024	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs964444	1.00[EUR][1000 genomes]
rs9823218	1.00[EUR][1000 genomes]
rs9826523	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs9830162	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9835919	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9856917	1.00[EUR][1000 genomes]
rs9860353	1.00[EUR][1000 genomes]
rs9869379	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs988374	1.00[EUR][1000 genomes]
rs990256	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs992130	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829674	chr3:110616256-110771049	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv3444064	chr3:110679162-110683960	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110670400-110682400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:110674800-110684600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:110678800-110680600	Enhancers	Dnd41	blood

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