Variant report

Variant	rs964444
Chromosome Location	chr3:110491840-110491841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1020891	1.00[EUR][1000 genomes]
rs1037960	1.00[EUR][1000 genomes]
rs1040004	1.00[EUR][1000 genomes]
rs1160101	1.00[EUR][1000 genomes]
rs11929276	1.00[EUR][1000 genomes]
rs12330541	1.00[EUR][1000 genomes]
rs1350928	1.00[EUR][1000 genomes]
rs1350931	1.00[EUR][1000 genomes]
rs1381827	1.00[EUR][1000 genomes]
rs1381829	1.00[EUR][1000 genomes]
rs1398343	1.00[EUR][1000 genomes]
rs1462297	1.00[EUR][1000 genomes]
rs1462312	1.00[EUR][1000 genomes]
rs1462791	1.00[EUR][1000 genomes]
rs1462792	1.00[EUR][1000 genomes]
rs1462796	1.00[EUR][1000 genomes]
rs1462806	1.00[EUR][1000 genomes]
rs1512513	1.00[EUR][1000 genomes]
rs1533193	1.00[EUR][1000 genomes]
rs1546533	1.00[EUR][1000 genomes]
rs1580287	1.00[EUR][1000 genomes]
rs1599575	1.00[EUR][1000 genomes]
rs1599577	1.00[EUR][1000 genomes]
rs1599665	1.00[EUR][1000 genomes]
rs1841734	1.00[EUR][1000 genomes]
rs1849369	1.00[EUR][1000 genomes]
rs1903758	1.00[EUR][1000 genomes]
rs1960628	1.00[EUR][1000 genomes]
rs1975901	1.00[EUR][1000 genomes]
rs1993781	1.00[EUR][1000 genomes]
rs1993801	1.00[EUR][1000 genomes]
rs2054376	1.00[EUR][1000 genomes]
rs2061682	1.00[EUR][1000 genomes]
rs2137383	1.00[EUR][1000 genomes]
rs2169566	1.00[EUR][1000 genomes]
rs3957571	1.00[EUR][1000 genomes]
rs3957572	1.00[EUR][1000 genomes]
rs4305447	1.00[EUR][1000 genomes]
rs4333116	1.00[EUR][1000 genomes]
rs4549301	1.00[EUR][1000 genomes]
rs4593059	1.00[EUR][1000 genomes]
rs4682012	1.00[EUR][1000 genomes]
rs4682021	1.00[EUR][1000 genomes]
rs4682216	1.00[EUR][1000 genomes]
rs4682218	1.00[EUR][1000 genomes]
rs4682220	1.00[EUR][1000 genomes]
rs58412853	1.00[EUR][1000 genomes]
rs6437932	1.00[EUR][1000 genomes]
rs6437935	1.00[EUR][1000 genomes]
rs6437936	1.00[EUR][1000 genomes]
rs6766908	1.00[EUR][1000 genomes]
rs6780526	1.00[EUR][1000 genomes]
rs6781418	1.00[EUR][1000 genomes]
rs6781884	1.00[EUR][1000 genomes]
rs6794368	1.00[EUR][1000 genomes]
rs6798353	1.00[EUR][1000 genomes]
rs72941202	1.00[EUR][1000 genomes]
rs72943104	1.00[EUR][1000 genomes]
rs72943107	1.00[EUR][1000 genomes]
rs72943108	1.00[EUR][1000 genomes]
rs72943110	1.00[EUR][1000 genomes]
rs72943111	1.00[EUR][1000 genomes]
rs72943114	1.00[EUR][1000 genomes]
rs72943119	1.00[EUR][1000 genomes]
rs72944942	1.00[EUR][1000 genomes]
rs72944943	1.00[EUR][1000 genomes]
rs72944949	1.00[EUR][1000 genomes]
rs72944956	1.00[EUR][1000 genomes]
rs72944965	1.00[EUR][1000 genomes]
rs7609772	1.00[EUR][1000 genomes]
rs7612471	1.00[EUR][1000 genomes]
rs7615275	1.00[EUR][1000 genomes]
rs7618482	1.00[EUR][1000 genomes]
rs7619978	1.00[EUR][1000 genomes]
rs7634788	1.00[EUR][1000 genomes]
rs7639735	1.00[EUR][1000 genomes]
rs7641366	1.00[EUR][1000 genomes]
rs7642037	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7644614	1.00[EUR][1000 genomes]
rs898974	1.00[EUR][1000 genomes]
rs9288915	1.00[EUR][1000 genomes]
rs931024	1.00[EUR][1000 genomes]
rs9818867	1.00[EUR][1000 genomes]
rs9823218	1.00[EUR][1000 genomes]
rs9824638	1.00[EUR][1000 genomes]
rs9826523	1.00[EUR][1000 genomes]
rs9829084	1.00[EUR][1000 genomes]
rs9830162	1.00[EUR][1000 genomes]
rs9835919	1.00[EUR][1000 genomes]
rs9856917	1.00[EUR][1000 genomes]
rs9860353	1.00[EUR][1000 genomes]
rs9868966	1.00[EUR][1000 genomes]
rs9869379	1.00[EUR][1000 genomes]
rs9874159	1.00[EUR][1000 genomes]
rs988374	1.00[EUR][1000 genomes]
rs990256	1.00[EUR][1000 genomes]
rs992130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv829673	chr3:110378069-110530815	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110471400-110492200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:110472600-110492400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:110486400-110492200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:110490000-110494400	Enhancers	HepG2	liver
5	chr3:110490400-110494400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:110490600-110492400	Enhancers	Fetal Heart	heart
7	chr3:110490600-110494400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:110491200-110492200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:110491200-110492200	Weak transcription	HSMM	muscle
10	chr3:110491600-110492000	Enhancers	A549	lung
11	chr3:110491600-110492200	Enhancers	HSMMtube	muscle
12	chr3:110491600-110492600	Enhancers	NHLF	lung
13	chr3:110491600-110492800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:110491600-110494000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:110491800-110492200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:110491800-110492800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:110491800-110492800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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