Variant report

Variant	rs1037960
Chromosome Location	chr3:110473371-110473372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1020891	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1040004	1.00[EUR][1000 genomes]
rs1160101	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11929276	1.00[EUR][1000 genomes]
rs12330541	1.00[EUR][1000 genomes]
rs1350928	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1350931	1.00[EUR][1000 genomes]
rs1381827	1.00[EUR][1000 genomes]
rs1381829	1.00[EUR][1000 genomes]
rs1398343	1.00[EUR][1000 genomes]
rs1462297	1.00[EUR][1000 genomes]
rs1462312	1.00[EUR][1000 genomes]
rs1462791	1.00[EUR][1000 genomes]
rs1462792	1.00[EUR][1000 genomes]
rs1462796	1.00[EUR][1000 genomes]
rs1462806	1.00[EUR][1000 genomes]
rs1512513	1.00[EUR][1000 genomes]
rs1512517	1.00[EUR][1000 genomes]
rs1533193	1.00[EUR][1000 genomes]
rs1546533	1.00[EUR][1000 genomes]
rs1580287	1.00[EUR][1000 genomes]
rs1599575	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1599577	1.00[EUR][1000 genomes]
rs1599665	1.00[EUR][1000 genomes]
rs1841734	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1849369	1.00[EUR][1000 genomes]
rs1903758	1.00[EUR][1000 genomes]
rs1913098	1.00[EUR][1000 genomes]
rs1960628	1.00[EUR][1000 genomes]
rs1975901	1.00[EUR][1000 genomes]
rs1993781	1.00[EUR][1000 genomes]
rs1993801	1.00[EUR][1000 genomes]
rs2036968	1.00[EUR][1000 genomes]
rs2054376	1.00[EUR][1000 genomes]
rs2061682	1.00[EUR][1000 genomes]
rs2137383	1.00[EUR][1000 genomes]
rs2169566	1.00[EUR][1000 genomes]
rs3957571	1.00[EUR][1000 genomes]
rs3957572	1.00[EUR][1000 genomes]
rs4305447	1.00[EUR][1000 genomes]
rs4333116	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4549301	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4593059	1.00[EUR][1000 genomes]
rs4682012	1.00[EUR][1000 genomes]
rs4682021	1.00[EUR][1000 genomes]
rs4682216	1.00[EUR][1000 genomes]
rs4682218	1.00[EUR][1000 genomes]
rs4682220	1.00[EUR][1000 genomes]
rs58412853	1.00[EUR][1000 genomes]
rs6437932	1.00[EUR][1000 genomes]
rs6437935	1.00[EUR][1000 genomes]
rs6437936	1.00[EUR][1000 genomes]
rs6766908	1.00[EUR][1000 genomes]
rs6780526	1.00[EUR][1000 genomes]
rs6781418	1.00[EUR][1000 genomes]
rs6781884	1.00[EUR][1000 genomes]
rs6794368	1.00[EUR][1000 genomes]
rs6798353	1.00[EUR][1000 genomes]
rs72941202	1.00[EUR][1000 genomes]
rs72943104	1.00[EUR][1000 genomes]
rs72943107	1.00[EUR][1000 genomes]
rs72943108	1.00[EUR][1000 genomes]
rs72943110	1.00[EUR][1000 genomes]
rs72943111	1.00[EUR][1000 genomes]
rs72943114	1.00[EUR][1000 genomes]
rs72943119	1.00[EUR][1000 genomes]
rs72944942	1.00[EUR][1000 genomes]
rs72944943	1.00[EUR][1000 genomes]
rs72944949	1.00[EUR][1000 genomes]
rs72944956	1.00[EUR][1000 genomes]
rs72944965	1.00[EUR][1000 genomes]
rs7609772	1.00[EUR][1000 genomes]
rs7612471	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7615275	1.00[EUR][1000 genomes]
rs7618482	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7619978	1.00[EUR][1000 genomes]
rs7634788	1.00[EUR][1000 genomes]
rs7639735	1.00[EUR][1000 genomes]
rs7641366	1.00[EUR][1000 genomes]
rs7642037	1.00[EUR][1000 genomes]
rs7644614	1.00[EUR][1000 genomes]
rs9288915	1.00[EUR][1000 genomes]
rs931024	1.00[EUR][1000 genomes]
rs964444	1.00[EUR][1000 genomes]
rs9818867	1.00[EUR][1000 genomes]
rs9823218	1.00[EUR][1000 genomes]
rs9824638	1.00[EUR][1000 genomes]
rs9826523	1.00[EUR][1000 genomes]
rs9829084	1.00[EUR][1000 genomes]
rs9830162	1.00[EUR][1000 genomes]
rs9856917	1.00[EUR][1000 genomes]
rs9860353	1.00[EUR][1000 genomes]
rs9868966	1.00[EUR][1000 genomes]
rs9869379	1.00[EUR][1000 genomes]
rs9874159	1.00[EUR][1000 genomes]
rs988374	1.00[EUR][1000 genomes]
rs992130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv829673	chr3:110378069-110530815	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110468400-110473600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:110471200-110473600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:110471400-110492200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:110471600-110473400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:110471600-110474600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:110472200-110474600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:110472400-110474600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:110472400-110475400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:110472600-110474600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:110472600-110492400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:110472800-110475600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:110473000-110475000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:110473000-110475200	Enhancers	HepG2	liver
14	chr3:110473000-110475800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:110473200-110473400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr3:110473200-110473600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:110473200-110473800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:110473200-110475000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:110473200-110475800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr3:110473200-110476200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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