Variant report

Variant	rs7628921
Chromosome Location	chr3:110766925-110766926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11929276	1.00[EUR][1000 genomes]
rs1381827	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1381829	1.00[EUR][1000 genomes]
rs1462791	1.00[EUR][1000 genomes]
rs1462792	1.00[EUR][1000 genomes]
rs1462796	1.00[EUR][1000 genomes]
rs1462806	1.00[EUR][1000 genomes]
rs1580287	1.00[EUR][1000 genomes]
rs1599665	1.00[EUR][1000 genomes]
rs1903758	1.00[EUR][1000 genomes]
rs1960628	1.00[EUR][1000 genomes]
rs1975901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1993801	1.00[EUR][1000 genomes]
rs2061682	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2169566	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4305447	1.00[EUR][1000 genomes]
rs4593059	1.00[EUR][1000 genomes]
rs4682216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682218	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682220	1.00[EUR][1000 genomes]
rs4682233	1.00[EUR][1000 genomes]
rs4682236	1.00[EUR][1000 genomes]
rs4682237	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs4682241	1.00[EUR][1000 genomes]
rs58106260	1.00[EUR][1000 genomes]
rs58423117	1.00[EUR][1000 genomes]
rs61035297	1.00[EUR][1000 genomes]
rs6437932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437935	1.00[EUR][1000 genomes]
rs6437936	1.00[EUR][1000 genomes]
rs6437956	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6765553	1.00[EUR][1000 genomes]
rs72935984	1.00[EUR][1000 genomes]
rs72935992	1.00[EUR][1000 genomes]
rs72937908	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72937909	1.00[EUR][1000 genomes]
rs72937912	1.00[EUR][1000 genomes]
rs72937914	1.00[EUR][1000 genomes]
rs72937920	1.00[EUR][1000 genomes]
rs72937925	1.00[EUR][1000 genomes]
rs72937928	1.00[EUR][1000 genomes]
rs72937936	1.00[EUR][1000 genomes]
rs72937963	1.00[EUR][1000 genomes]
rs72937977	1.00[EUR][1000 genomes]
rs72937981	1.00[EUR][1000 genomes]
rs72937998	1.00[EUR][1000 genomes]
rs72939908	1.00[EUR][1000 genomes]
rs7609772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7619492	1.00[EUR][1000 genomes]
rs7628011	1.00[EUR][1000 genomes]
rs7634788	1.00[EUR][1000 genomes]
rs7637601	1.00[EUR][1000 genomes]
rs7637704	1.00[EUR][1000 genomes]
rs7641469	1.00[EUR][1000 genomes]
rs7650020	1.00[EUR][1000 genomes]
rs898974	1.00[EUR][1000 genomes]
rs931024	1.00[EUR][1000 genomes]
rs9823218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9826523	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9830162	1.00[EUR][1000 genomes]
rs9835919	1.00[EUR][1000 genomes]
rs9856917	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9860353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869379	1.00[EUR][1000 genomes]
rs990256	1.00[EUR][1000 genomes]
rs992130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv829674	chr3:110616256-110771049	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110763800-110768600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:110764000-110767400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:110764000-110769000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:110764400-110767200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:110764400-110767400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:110764400-110767800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:110764400-110768800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:110764400-110768800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:110765000-110788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:110765400-110767000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:110765400-110768400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:110765600-110767400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:110765800-110767600	Enhancers	HepG2	liver
14	chr3:110765800-110768000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:110765800-110768600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:110766600-110767000	Flanking Active TSS	Liver	Liver
17	chr3:110766600-110767600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:110766800-110767000	Enhancers	Placenta	Placenta
19	chr3:110766800-110767200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr3:110766800-110767200	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr3:110766800-110767200	Enhancers	Fetal Lung	lung
22	chr3:110766800-110767200	Enhancers	Stomach Mucosa	stomach
23	chr3:110766800-110767400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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