Variant report

Variant	rs72937925
Chromosome Location	chr3:110850348-110850349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110850049..110852272-chr3:110854262..110855998,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11929276	1.00[EUR][1000 genomes]
rs1381827	1.00[EUR][1000 genomes]
rs1381829	1.00[EUR][1000 genomes]
rs1462791	1.00[EUR][1000 genomes]
rs1462792	1.00[EUR][1000 genomes]
rs1462796	1.00[EUR][1000 genomes]
rs1462806	1.00[EUR][1000 genomes]
rs1580287	1.00[EUR][1000 genomes]
rs1599665	1.00[EUR][1000 genomes]
rs1960628	1.00[EUR][1000 genomes]
rs1993801	1.00[EUR][1000 genomes]
rs2061682	1.00[EUR][1000 genomes]
rs3733175	1.00[AMR][1000 genomes]
rs4305447	1.00[EUR][1000 genomes]
rs4593059	1.00[EUR][1000 genomes]
rs4682216	1.00[EUR][1000 genomes]
rs4682218	1.00[EUR][1000 genomes]
rs4682220	1.00[EUR][1000 genomes]
rs4682233	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682236	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682237	1.00[EUR][1000 genomes]
rs4682239	1.00[AMR][1000 genomes]
rs4682241	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58106260	1.00[EUR][1000 genomes]
rs58423117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59248935	1.00[AMR][1000 genomes]
rs61035297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437935	1.00[EUR][1000 genomes]
rs6437936	1.00[EUR][1000 genomes]
rs6437956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765553	1.00[EUR][1000 genomes]
rs6804912	0.89[AMR][1000 genomes]
rs72935984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937908	1.00[EUR][1000 genomes]
rs72937909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937912	1.00[EUR][1000 genomes]
rs72937914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937920	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937928	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937936	1.00[EUR][1000 genomes]
rs72937940	1.00[AMR][1000 genomes]
rs72937946	1.00[AMR][1000 genomes]
rs72937954	1.00[AMR][1000 genomes]
rs72937963	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937977	1.00[EUR][1000 genomes]
rs72937981	1.00[EUR][1000 genomes]
rs72937987	0.89[AMR][1000 genomes]
rs72937998	1.00[EUR][1000 genomes]
rs72939908	1.00[EUR][1000 genomes]
rs7609772	1.00[EUR][1000 genomes]
rs7619492	1.00[EUR][1000 genomes]
rs7628011	1.00[EUR][1000 genomes]
rs7628921	1.00[EUR][1000 genomes]
rs7634788	1.00[EUR][1000 genomes]
rs7637601	1.00[EUR][1000 genomes]
rs7637704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641469	1.00[EUR][1000 genomes]
rs7650020	1.00[EUR][1000 genomes]
rs898974	1.00[EUR][1000 genomes]
rs931024	1.00[EUR][1000 genomes]
rs9830162	1.00[EUR][1000 genomes]
rs9835919	1.00[EUR][1000 genomes]
rs9856917	1.00[EUR][1000 genomes]
rs9869379	1.00[EUR][1000 genomes]
rs990256	1.00[EUR][1000 genomes]
rs992130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv591276	chr3:110822496-110854196	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv877338	chr3:110824425-110860188	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv1008308	chr3:110836281-110885834	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv963531	chr3:110844919-110856568	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110816000-110873800	Weak transcription	Left Ventricle	heart
2	chr3:110816000-110893400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:110817400-110855200	Weak transcription	Pancreas	Pancrea
4	chr3:110819200-110857200	Weak transcription	NHLF	lung
5	chr3:110826800-110884200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:110828000-110851400	Weak transcription	Aorta	Aorta
7	chr3:110829400-110893400	Weak transcription	HUVEC	blood vessel
8	chr3:110830400-110852800	Weak transcription	NH-A	brain
9	chr3:110830600-110854200	Weak transcription	Right Ventricle	heart
10	chr3:110830800-110852400	Weak transcription	Fetal Brain Male	brain
11	chr3:110830800-110853800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:110832000-110854600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:110832000-110854600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:110832000-110856600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:110832200-110852400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:110832200-110853600	Weak transcription	HSMMtube	muscle
17	chr3:110832200-110881800	Weak transcription	Small Intestine	intestine
18	chr3:110832200-110892400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:110832400-110911200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:110832800-110852400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:110833600-110855400	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:110834000-110891800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:110834400-110852400	Weak transcription	Ovary	ovary
24	chr3:110835600-110929600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:110836200-110872800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:110837200-110854400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:110838400-110880200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:110842600-110852400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:110842600-110852400	Weak transcription	Fetal Heart	heart
30	chr3:110842600-110911200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:110843000-110852400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:110843000-110857400	Weak transcription	Adipose Nuclei	Adipose
33	chr3:110843800-110852400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:110845400-110880000	Weak transcription	Fetal Kidney	kidney
35	chr3:110846000-110863600	Weak transcription	NHDF-Ad	bronchial
36	chr3:110846800-110852400	Weak transcription	HSMM	muscle
37	chr3:110847000-110852400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:110847000-110854200	Weak transcription	Osteobl	bone
39	chr3:110847000-110873800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr3:110847000-110911400	Weak transcription	Fetal Muscle Leg	muscle
41	chr3:110847200-110852000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:110847200-110852400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:110847200-110852400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:110847200-110873800	Weak transcription	Fetal Intestine Small	intestine
45	chr3:110847200-110874000	Weak transcription	Fetal Stomach	stomach
46	chr3:110848000-110852400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr3:110848000-110852400	Weak transcription	Liver	Liver
48	chr3:110848000-110852400	Weak transcription	Fetal Lung	lung
49	chr3:110848000-110852400	Weak transcription	Dnd41	blood
50	chr3:110848000-110852600	Weak transcription	A549	lung

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