Variant report

Variant	rs61035297
Chromosome Location	chr3:110794194-110794195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11929276	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1381827	1.00[EUR][1000 genomes]
rs1381829	1.00[EUR][1000 genomes]
rs1462791	1.00[EUR][1000 genomes]
rs1462792	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1462796	1.00[EUR][1000 genomes]
rs1462806	1.00[EUR][1000 genomes]
rs1580287	1.00[EUR][1000 genomes]
rs1599665	1.00[EUR][1000 genomes]
rs1903758	1.00[EUR][1000 genomes]
rs1960628	1.00[EUR][1000 genomes]
rs1975901	1.00[EUR][1000 genomes]
rs1993801	1.00[EUR][1000 genomes]
rs2061682	1.00[EUR][1000 genomes]
rs2169566	1.00[EUR][1000 genomes]
rs3733175	1.00[AMR][1000 genomes]
rs4305447	1.00[EUR][1000 genomes]
rs4593059	1.00[EUR][1000 genomes]
rs4682216	1.00[EUR][1000 genomes]
rs4682218	1.00[EUR][1000 genomes]
rs4682220	1.00[EUR][1000 genomes]
rs4682233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682237	1.00[EUR][1000 genomes]
rs4682239	1.00[AMR][1000 genomes]
rs4682241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58106260	1.00[EUR][1000 genomes]
rs58423117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59248935	1.00[AMR][1000 genomes]
rs6437932	1.00[EUR][1000 genomes]
rs6437935	1.00[EUR][1000 genomes]
rs6437936	1.00[EUR][1000 genomes]
rs6437956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765133	0.88[AFR][1000 genomes]
rs6765553	1.00[EUR][1000 genomes]
rs6804912	0.89[AMR][1000 genomes]
rs72935984	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935996	0.82[AFR][1000 genomes]
rs72937908	1.00[EUR][1000 genomes]
rs72937909	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937912	1.00[EUR][1000 genomes]
rs72937914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937936	1.00[EUR][1000 genomes]
rs72937940	1.00[AMR][1000 genomes]
rs72937946	1.00[AMR][1000 genomes]
rs72937954	1.00[AMR][1000 genomes]
rs72937963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937977	1.00[EUR][1000 genomes]
rs72937981	1.00[EUR][1000 genomes]
rs72937987	0.89[AMR][1000 genomes]
rs72937998	1.00[EUR][1000 genomes]
rs72939908	1.00[EUR][1000 genomes]
rs7609772	1.00[EUR][1000 genomes]
rs7619492	1.00[EUR][1000 genomes]
rs7628011	1.00[EUR][1000 genomes]
rs7628921	1.00[EUR][1000 genomes]
rs7634788	1.00[EUR][1000 genomes]
rs7637601	1.00[EUR][1000 genomes]
rs7637704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641469	1.00[EUR][1000 genomes]
rs7650020	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs898974	1.00[EUR][1000 genomes]
rs931024	1.00[EUR][1000 genomes]
rs9823218	1.00[EUR][1000 genomes]
rs9826523	1.00[EUR][1000 genomes]
rs9830162	1.00[EUR][1000 genomes]
rs9835919	1.00[EUR][1000 genomes]
rs9856917	1.00[EUR][1000 genomes]
rs9860353	1.00[EUR][1000 genomes]
rs9869379	1.00[EUR][1000 genomes]
rs990256	1.00[EUR][1000 genomes]
rs992130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110788600-110794200	Active TSS	Ovary	ovary
2	chr3:110788600-110794600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr3:110789000-110794200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:110789200-110794200	Active TSS	NHLF	lung
5	chr3:110789200-110794800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:110789600-110794800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:110791800-110794200	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr3:110792200-110794200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:110792200-110794400	Active TSS	Duodenum Mucosa	Duodenum
10	chr3:110792200-110794800	Flanking Active TSS	Dnd41	blood
11	chr3:110792400-110795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:110792400-110795600	Weak transcription	Small Intestine	intestine
13	chr3:110792600-110794200	Active TSS	NH-A	brain
14	chr3:110792600-110800000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:110792600-110802200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:110792600-110803600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:110792800-110794200	Weak transcription	Brain Anterior Caudate	brain
18	chr3:110792800-110794200	Enhancers	Fetal Heart	heart
19	chr3:110792800-110795000	Active TSS	Fetal Brain Female	brain
20	chr3:110793000-110794400	Enhancers	Colon Smooth Muscle	Colon
21	chr3:110793000-110794800	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:110793000-110796800	Enhancers	Liver	Liver
23	chr3:110793000-110798400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:110793000-110799200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr3:110793000-110799200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:110793000-110799400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:110793200-110794200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:110793200-110794200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr3:110793200-110794600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:110793200-110794800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr3:110793200-110796800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:110793200-110798800	Weak transcription	HSMM	muscle
33	chr3:110793200-110799400	Weak transcription	Fetal Kidney	kidney
34	chr3:110793200-110799800	Weak transcription	HSMMtube	muscle
35	chr3:110793400-110794200	Enhancers	HUVEC	blood vessel
36	chr3:110793400-110794800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:110793400-110795000	Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr3:110793400-110796600	Enhancers	HepG2	liver
39	chr3:110793400-110797200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:110793400-110799800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr3:110793600-110794200	Flanking Active TSS	NHDF-Ad	bronchial
42	chr3:110793600-110794400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr3:110793600-110794400	Flanking Active TSS	Fetal Lung	lung
44	chr3:110793600-110795200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:110793600-110797400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:110793800-110794200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr3:110793800-110794200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr3:110793800-110794200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr3:110793800-110794200	Active TSS	Fetal Brain Male	brain
50	chr3:110793800-110794200	Enhancers	Rectal Mucosa Donor 31	rectum

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