Variant report

Variant	rs73855128
Chromosome Location	chr3:111253972-111253973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11925588	1.00[AMR][1000 genomes]
rs11928127	1.00[AMR][1000 genomes]
rs11929008	1.00[AMR][1000 genomes]
rs16858218	0.95[AFR][1000 genomes]
rs16858221	0.95[AFR][1000 genomes]
rs16858229	0.84[AFR][1000 genomes]
rs28604915	1.00[EUR][1000 genomes]
rs34059586	1.00[AMR][1000 genomes]
rs57590158	0.95[AFR][1000 genomes]
rs58085859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58195592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795720	1.00[AMR][1000 genomes]
rs6802504	1.00[AMR][1000 genomes]
rs72939542	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855135	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73855136	0.90[AFR][1000 genomes]
rs73855137	0.95[AFR][1000 genomes]
rs73855138	0.95[AFR][1000 genomes]
rs73855139	0.95[AFR][1000 genomes]
rs73855140	0.95[AFR][1000 genomes]
rs73855144	0.95[AFR][1000 genomes]
rs7641242	1.00[AMR][1000 genomes]
rs981953	0.95[AFR][1000 genomes]
rs981954	0.95[AFR][1000 genomes]
rs981955	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv3946	chr3:111236035-111283038	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111252600-111254200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111253000-111254200	Enhancers	HSMMtube	muscle
3	chr3:111253000-111254400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:111253000-111254600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:111253200-111254200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:111253200-111254200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:111253200-111254200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:111253200-111254200	Enhancers	Dnd41	blood
9	chr3:111253200-111254200	Enhancers	HSMM	muscle
10	chr3:111253200-111254400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:111253200-111254400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:111253400-111254200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:111253400-111254200	Enhancers	Osteobl	bone
14	chr3:111253600-111254400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr3:111253600-111254600	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:111253600-111257400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:111253800-111254000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:111253800-111254200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:111253800-111257200	Weak transcription	Hela-S3	cervix
20	chr3:111253800-111257200	Weak transcription	HMEC	breast
21	chr3:111253800-111257200	Weak transcription	NH-A	brain

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