Variant report
| Variant | rs72939542 |
|---|---|
| Chromosome Location | chr3:111239193-111239194 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11925588 | 1.00[AMR][1000 genomes] |
| rs11928127 | 1.00[AMR][1000 genomes] |
| rs11929008 | 1.00[AMR][1000 genomes] |
| rs16858218 | 0.90[AFR][1000 genomes] |
| rs16858221 | 0.90[AFR][1000 genomes] |
| rs28604915 | 1.00[EUR][1000 genomes] |
| rs34059586 | 1.00[AMR][1000 genomes] |
| rs57590158 | 0.90[AFR][1000 genomes] |
| rs58085859 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58195592 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6795720 | 1.00[AMR][1000 genomes] |
| rs6802504 | 1.00[AMR][1000 genomes] |
| rs73855128 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73855135 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73855136 | 0.86[AFR][1000 genomes] |
| rs73855137 | 0.90[AFR][1000 genomes] |
| rs73855138 | 0.90[AFR][1000 genomes] |
| rs73855139 | 0.90[AFR][1000 genomes] |
| rs73855140 | 0.90[AFR][1000 genomes] |
| rs73855144 | 0.90[AFR][1000 genomes] |
| rs7641242 | 1.00[AMR][1000 genomes] |
| rs981953 | 0.90[AFR][1000 genomes] |
| rs981954 | 0.90[AFR][1000 genomes] |
| rs981955 | 0.90[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460821 | chr3:110637471-111501097 | Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv591275 | chr3:110637471-111501097 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv997756 | chr3:111226058-111376585 | Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv3946 | chr3:111236035-111283038 | Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:111236400-111249600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr3:111237000-111242400 | Weak transcription | Primary B cells from peripheral blood | blood |
