Variant report

Variant	rs58085859
Chromosome Location	chr3:111249705-111249706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11925588	1.00[AMR][1000 genomes]
rs11928127	1.00[AMR][1000 genomes]
rs11929008	1.00[AMR][1000 genomes]
rs16858218	0.95[AFR][1000 genomes]
rs16858221	0.95[AFR][1000 genomes]
rs16858229	0.84[AFR][1000 genomes]
rs28604915	1.00[EUR][1000 genomes]
rs34059586	1.00[AMR][1000 genomes]
rs57590158	0.95[AFR][1000 genomes]
rs58195592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795720	1.00[AMR][1000 genomes]
rs6802504	1.00[AMR][1000 genomes]
rs72939542	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855135	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73855136	0.90[AFR][1000 genomes]
rs73855137	0.95[AFR][1000 genomes]
rs73855138	0.95[AFR][1000 genomes]
rs73855139	0.95[AFR][1000 genomes]
rs73855140	0.95[AFR][1000 genomes]
rs73855144	0.95[AFR][1000 genomes]
rs7641242	1.00[AMR][1000 genomes]
rs981953	0.95[AFR][1000 genomes]
rs981954	0.95[AFR][1000 genomes]
rs981955	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv3946	chr3:111236035-111283038	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3394909	chr3:111242287-111250120	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
6	esv3495322	chr3:111242429-111249881	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv3495321	chr3:111242562-111250210	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
8	esv3495319	chr3:111243012-111250160	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3463778	chr3:111243862-111250360	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
10	esv3463779	chr3:111243862-111250360	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
11	nsv591289	chr3:111246000-111251208	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111249000-111250800	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:111249600-111249800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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