Variant report

Variant	rs11920402
Chromosome Location	chr3:89260260-89260261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11919464	1.00[AMR][1000 genomes]
rs11919479	0.85[YRI][hapmap]
rs11920405	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922059	1.00[AMR][1000 genomes]
rs11925725	1.00[AMR][1000 genomes]
rs57827001	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845986	1.00[AMR][1000 genomes]
rs73845987	1.00[AMR][1000 genomes]
rs73845988	1.00[AMR][1000 genomes]
rs73846002	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849203	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89250200-89263200	Weak transcription	Fetal Brain Female	brain
2	chr3:89250400-89261800	Weak transcription	Fetal Brain Male	brain
3	chr3:89258200-89261600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:89259600-89262000	Weak transcription	Fetal Lung	lung
5	chr3:89259800-89260400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:89259800-89263200	Weak transcription	Brain Germinal Matrix	brain
7	chr3:89259800-89266200	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:89259800-89266600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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