Variant report

Variant	rs57827001
Chromosome Location	chr3:89265943-89265944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11919464	1.00[AMR][1000 genomes]
rs11920402	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11920405	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922059	1.00[AMR][1000 genomes]
rs11925725	1.00[AMR][1000 genomes]
rs73845986	1.00[AMR][1000 genomes]
rs73845987	1.00[AMR][1000 genomes]
rs73845988	1.00[AMR][1000 genomes]
rs73846002	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2757001	chr3:89260495-89271087	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2759160	chr3:89260495-89271087	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89259800-89266200	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:89259800-89266600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:89263600-89277000	Weak transcription	Brain Germinal Matrix	brain
4	chr3:89265000-89266600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:89265200-89266400	Enhancers	Fetal Lung	lung
6	chr3:89265400-89266000	Enhancers	Osteobl	bone
7	chr3:89265400-89266200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:89265400-89266600	Active TSS	Right Atrium	heart
9	chr3:89265600-89266000	Weak transcription	Fetal Brain Male	brain
10	chr3:89265600-89266200	Enhancers	Fetal Stomach	stomach
11	chr3:89265600-89266400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:89265600-89266800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:89265800-89266200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:89265800-89266400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:89265800-89266400	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:89265800-89266600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:89265800-89267200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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