Variant report

Variant	rs11921425
Chromosome Location	chr3:103122585-103122586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11715084	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11921614	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12633105	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4373072	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270957	0.86[EUR][1000 genomes]
rs62270958	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9713760	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002641	chr3:102978116-103272330	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877238	chr3:103035266-103127478	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv948426	chr3:103046716-103952548	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv949251	chr3:103046716-103977037	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv527886	chr3:103048891-103989893	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv877241	chr3:103090241-103151043	Enhancers Weak transcription Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
7	nsv877242	chr3:103095170-103140700	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv877243	chr3:103095170-103151043	Enhancers Bivalent Enhancer Weak transcription	lncRNA	n/a	inside rSNPs	diseases
9	nsv877244	chr3:103095170-103203766	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv877245	chr3:103095170-103345913	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
11	nsv877246	chr3:103097277-103151043	Enhancers Weak transcription Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
12	nsv460794	chr3:103097277-103179688	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
13	nsv591195	chr3:103097277-103179688	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
14	nsv877247	chr3:103097277-103231959	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv460796	chr3:103097277-103260978	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Weak transcription	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
16	nsv460797	chr3:103097277-103260978	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
17	nsv591196	chr3:103097277-103260978	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
18	nsv460798	chr3:103097277-103274074	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
19	nsv591197	chr3:103097277-103274074	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
20	nsv591198	chr3:103101751-103180397	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
21	nsv460799	chr3:103122585-103212708	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	diseases
22	nsv591199	chr3:103122585-103212708	Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11921425	IMPG2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103121800-103122600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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