Variant report

Variant	rs11921557
Chromosome Location	chr3:68178286-68178287
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10865603	0.84[ASN][1000 genomes]
rs1595489	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56831191	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57701717	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60993082	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6548957	0.84[ASN][1000 genomes]
rs6548958	0.84[ASN][1000 genomes]
rs6548964	0.87[ASN][1000 genomes]
rs6548970	0.89[ASN][1000 genomes]
rs6548978	0.93[ASN][1000 genomes]
rs6548979	0.93[ASN][1000 genomes]
rs6549018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785163	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786795	0.84[ASN][1000 genomes]
rs6792628	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7626911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860971	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9867112	0.84[ASN][1000 genomes]
rs9874375	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3388647	chr3:68174762-68179060	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3429381	chr3:68175462-68178360	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68174400-68184200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:68177800-68178600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr3:68178000-68178400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:68178000-68178600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:68178000-68178600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:68178200-68178400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:68178200-68178600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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