Variant report

Variant	rs9860971
Chromosome Location	chr6:77496081-77496082
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10865603	0.81[ASN][1000 genomes]
rs11921557	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1595489	0.87[ASN][1000 genomes]
rs56831191	0.87[ASN][1000 genomes]
rs57701717	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60993082	0.96[ASN][1000 genomes]
rs6548957	0.81[ASN][1000 genomes]
rs6548958	0.81[ASN][1000 genomes]
rs6548964	0.83[ASN][1000 genomes]
rs6548970	0.85[ASN][1000 genomes]
rs6548978	0.89[ASN][1000 genomes]
rs6548979	0.89[ASN][1000 genomes]
rs6549018	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6785163	0.96[ASN][1000 genomes]
rs6786795	0.81[ASN][1000 genomes]
rs6792628	0.87[ASN][1000 genomes]
rs7626911	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9867112	0.81[ASN][1000 genomes]
rs9874375	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv886218	chr6:77415155-77500526	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886220	chr6:77415155-77505717	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886219	chr6:77415155-77515516	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77487400-77498800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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