Variant report

Variant	rs11923720
Chromosome Location	chr3:46345742-46345743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46345290..46347607-chr3:46348492..46350898,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10865940	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11130089	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11711054	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13081845	0.82[EUR][1000 genomes]
rs13096142	0.81[EUR][1000 genomes]
rs2157057	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2157059	0.80[AMR][1000 genomes]
rs2213291	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2213292	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34148191	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34193387	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34505903	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35053103	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35465430	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35675823	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35971655	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36030342	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4683198	0.83[EUR][1000 genomes]
rs62244827	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62244840	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62244848	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6441953	0.83[EUR][1000 genomes]
rs6441961	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6441962	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6441964	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6767895	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6771900	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6775208	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6788723	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6794300	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71615444	0.83[EUR][1000 genomes]
rs7372094	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7374654	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7374671	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7626249	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7634816	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs963045	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9813756	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9818053	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9852052	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9856098	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9875668	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46345200-46346400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:46345400-46350800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:46345600-46350600	Weak transcription	Monocytes-CD14+_RO01746	blood

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