Variant report

Variant	rs9852052
Chromosome Location	chr3:46343534-46343535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10865940	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130089	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11711054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11923720	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13081845	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13084656	0.80[ASN][1000 genomes]
rs13096142	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1799865	0.89[EUR][1000 genomes]
rs2097282	0.91[EUR][1000 genomes]
rs2097284	0.89[EUR][1000 genomes]
rs2157057	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2157058	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2157059	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2187669	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2187670	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2213291	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2213292	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3092963	0.89[EUR][1000 genomes]
rs3138042	0.89[EUR][1000 genomes]
rs34148191	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34193387	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34505903	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34997146	0.85[AMR][1000 genomes]
rs35053103	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35465430	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35510257	0.85[AMR][1000 genomes]
rs35675823	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35971655	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36030342	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36048784	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3918358	0.89[EUR][1000 genomes]
rs4134396	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4683198	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4683211	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4683215	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62244813	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62244827	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62244828	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62244840	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62244848	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441953	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441958	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6441959	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6441960	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6441961	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441962	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441963	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6441964	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441972	0.89[EUR][1000 genomes]
rs6767895	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6771900	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6775208	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6783993	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6785878	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6785981	0.89[EUR][1000 genomes]
rs6788723	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6793850	0.80[ASN][1000 genomes]
rs6794300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802288	0.86[EUR][1000 genomes]
rs71615444	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7372094	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7374654	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7374671	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7432080	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7612940	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7626249	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs762789	0.81[EUR][1000 genomes]
rs7634816	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7635588	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs963045	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9813756	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9818053	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9842716	0.80[ASN][1000 genomes]
rs9853223	0.80[ASN][1000 genomes]
rs9856098	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9875668	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46335000-46345400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46337800-46343800	Enhancers	Dnd41	blood
3	chr3:46338000-46343600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:46338000-46343600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:46338200-46344200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:46338400-46343600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:46338400-46343800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:46338400-46344800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:46338600-46344000	Enhancers	Primary T cells from cord blood	blood
10	chr3:46338600-46344200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:46338600-46344200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr3:46338600-46344400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr3:46339200-46343800	Enhancers	Primary B cells from cord blood	blood
14	chr3:46339200-46343800	Enhancers	Primary B cells from peripheral blood	blood
15	chr3:46340200-46343800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr3:46340800-46344000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:46340800-46344800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:46341200-46344200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr3:46341400-46344800	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:46342200-46345400	Enhancers	GM12878-XiMat	blood
21	chr3:46342800-46343600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:46342800-46343800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:46343000-46345000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:46343200-46343800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:46343200-46345200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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