Variant report

Variant	rs762789
Chromosome Location	chr3:46402627-46402628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1034382	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10865940	0.84[EUR][1000 genomes]
rs11130089	0.84[EUR][1000 genomes]
rs11711054	0.82[EUR][1000 genomes]
rs1799865	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040389	0.83[ASN][1000 genomes]
rs2040390	0.83[ASN][1000 genomes]
rs2097282	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2097283	0.83[ASN][1000 genomes]
rs2097284	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157057	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2157059	0.80[ASN][1000 genomes]
rs2213288	0.83[ASN][1000 genomes]
rs2213291	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2213292	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2373226	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3092962	0.84[ASN][1000 genomes]
rs3092963	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092964	0.84[ASN][1000 genomes]
rs3138042	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34148191	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34193387	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34505903	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35053103	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35465430	0.85[EUR][1000 genomes]
rs35675823	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35971655	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36030342	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3762823	0.84[ASN][1000 genomes]
rs3918358	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918359	0.84[ASN][1000 genomes]
rs3918361	0.84[ASN][1000 genomes]
rs62244827	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62244840	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62244848	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6441961	0.84[EUR][1000 genomes]
rs6441962	0.84[EUR][1000 genomes]
rs6441964	0.81[EUR][1000 genomes]
rs6441968	0.84[ASN][1000 genomes]
rs6441972	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67450950	0.80[ASN][1000 genomes]
rs6765031	0.84[ASN][1000 genomes]
rs6767895	0.84[EUR][1000 genomes]
rs6771900	0.84[EUR][1000 genomes]
rs6775208	0.84[EUR][1000 genomes]
rs6785981	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788723	0.84[EUR][1000 genomes]
rs6794300	0.82[EUR][1000 genomes]
rs6801761	0.84[ASN][1000 genomes]
rs7372094	0.82[EUR][1000 genomes]
rs7374654	0.82[EUR][1000 genomes]
rs7626249	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7634816	0.84[EUR][1000 genomes]
rs768539	0.84[ASN][1000 genomes]
rs963045	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9813756	0.82[EUR][1000 genomes]
rs9818053	0.83[EUR][1000 genomes]
rs9852052	0.81[EUR][1000 genomes]
rs9856098	0.84[EUR][1000 genomes]
rs9875668	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46395800-46404200	Weak transcription	Right Atrium	heart
2	chr3:46396000-46422000	Weak transcription	Lung	lung
3	chr3:46398000-46404200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:46398600-46402800	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
5	chr3:46399400-46404000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:46400200-46404200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr3:46400400-46404200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:46400400-46404400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:46400600-46403000	Enhancers	Fetal Stomach	stomach
10	chr3:46400600-46404000	Enhancers	Primary B cells from cord blood	blood
11	chr3:46400800-46403200	Enhancers	Brain Germinal Matrix	brain
12	chr3:46400800-46403400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr3:46400800-46403800	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:46401000-46403000	Enhancers	Brain Anterior Caudate	brain
15	chr3:46401000-46403000	Enhancers	Brain Hippocampus Middle	brain
16	chr3:46401000-46403000	Enhancers	HSMMtube	muscle
17	chr3:46401000-46403200	Enhancers	Adipose Nuclei	Adipose
18	chr3:46401000-46403200	Enhancers	HSMM	muscle
19	chr3:46401000-46403400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr3:46401000-46403800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:46401000-46404000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:46401000-46404000	Enhancers	Fetal Thymus	thymus
23	chr3:46401000-46404200	Enhancers	Primary B cells from peripheral blood	blood
24	chr3:46401000-46404400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:46401000-46404600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:46401200-46402800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:46401200-46402800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:46401200-46403200	Enhancers	NHDF-Ad	bronchial
29	chr3:46401200-46403600	Enhancers	Brain Substantia Nigra	brain
30	chr3:46401400-46402800	Enhancers	Fetal Brain Male	brain
31	chr3:46401400-46403000	Genic enhancers	Primary monocytes fromperipheralblood	blood
32	chr3:46401400-46403000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr3:46401600-46403400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:46401600-46403800	Enhancers	Duodenum Mucosa	Duodenum
35	chr3:46401800-46403200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:46401800-46403400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:46402000-46403200	Enhancers	Colonic Mucosa	Colon
38	chr3:46402000-46403200	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr3:46402000-46403400	Enhancers	Placenta	Placenta
40	chr3:46402000-46403600	Weak transcription	Fetal Intestine Large	intestine
41	chr3:46402000-46403800	Enhancers	Brain Cingulate Gyrus	brain
42	chr3:46402200-46402800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr3:46402200-46403400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:46402200-46404400	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr3:46402200-46404400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr3:46402400-46402800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:46402400-46403000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:46402400-46403200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:46402400-46403200	Enhancers	Fetal Muscle Trunk	muscle
50	chr3:46402400-46403200	Enhancers	Fetal Muscle Leg	muscle

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