Variant report

Variant	rs3092964
Chromosome Location	chr3:46395585-46395586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1034382	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1799865	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2040389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2040390	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2097282	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2097283	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2097284	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2157058	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2187669	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2187670	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2213288	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2373226	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092963	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3138042	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34997146	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35510257	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36048784	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36118141	0.80[EUR][1000 genomes]
rs3762823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918358	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3918359	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276529	0.80[EUR][1000 genomes]
rs4683194	0.80[EUR][1000 genomes]
rs4683199	0.81[EUR][1000 genomes]
rs4683211	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4683215	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4683218	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62244813	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6441950	0.80[EUR][1000 genomes]
rs6441958	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6441959	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6441960	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441972	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs67450950	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6765031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783993	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6785981	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6801761	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810232	0.80[EUR][1000 genomes]
rs7371987	0.80[EUR][1000 genomes]
rs7432080	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7612940	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs762789	0.84[ASN][1000 genomes]
rs7635588	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs768539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9839623	0.80[EUR][1000 genomes]
rs9840204	0.80[EUR][1000 genomes]
rs9877860	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46390200-46396400	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:46390200-46397800	Enhancers	Fetal Thymus	thymus
3	chr3:46390800-46396800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:46391800-46396400	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:46392200-46396800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:46392400-46396600	Enhancers	Dnd41	blood
7	chr3:46392400-46402600	Weak transcription	Spleen	Spleen
8	chr3:46394000-46395600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:46394000-46396400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr3:46394200-46396400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr3:46394400-46401200	Weak transcription	Brain Substantia Nigra	brain
12	chr3:46394600-46395600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:46394600-46396000	Enhancers	GM12878-XiMat	blood
14	chr3:46395000-46396600	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr3:46395200-46395600	Active TSS	Primary T cells fromperipheralblood	blood
16	chr3:46395200-46395800	Enhancers	HSMMtube	muscle
17	chr3:46395200-46396000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:46395200-46396000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:46395200-46396000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr3:46395200-46396400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr3:46395200-46397000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
22	chr3:46395400-46395600	Active TSS	Primary monocytes fromperipheralblood	blood
23	chr3:46395400-46395600	Enhancers	Primary T cells from cord blood	blood
24	chr3:46395400-46395600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:46395400-46395600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:46395400-46395600	Active TSS	Monocytes-CD14+_RO01746	blood
27	chr3:46395400-46395800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr3:46395400-46396000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr3:46395400-46396000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:46395400-46396200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
31	chr3:46395400-46397000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr3:46395400-46398000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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