Variant report

Variant	rs2097284
Chromosome Location	chr3:46388188-46388189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46388161..46392582-chr3:46393253..46399062,5	K562	blood:

Variant related genes	Relation type
ENSG00000121807	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1034382	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10865940	0.91[EUR][1000 genomes]
rs11130089	0.91[EUR][1000 genomes]
rs11711054	0.90[EUR][1000 genomes]
rs1799865	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040389	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2040390	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2097282	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2097283	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2157057	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2157059	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2213288	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2213291	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2213292	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2373226	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3092962	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3092963	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092964	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3138042	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34148191	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34193387	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34505903	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35053103	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35465430	0.93[EUR][1000 genomes]
rs35675823	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35971655	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36030342	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3762823	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3918358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918359	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3918361	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4134396	0.84[EUR][1000 genomes]
rs4683198	0.82[EUR][1000 genomes]
rs62244827	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62244840	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62244848	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6441953	0.82[EUR][1000 genomes]
rs6441961	0.91[EUR][1000 genomes]
rs6441962	0.91[EUR][1000 genomes]
rs6441964	0.89[EUR][1000 genomes]
rs6441968	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6441972	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67450950	0.80[ASN][1000 genomes]
rs6765031	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6767895	0.91[EUR][1000 genomes]
rs6771900	0.91[EUR][1000 genomes]
rs6775208	0.91[EUR][1000 genomes]
rs6785981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788723	0.91[EUR][1000 genomes]
rs6794300	0.90[EUR][1000 genomes]
rs6801761	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs71615444	0.82[EUR][1000 genomes]
rs7372094	0.90[EUR][1000 genomes]
rs7374654	0.90[EUR][1000 genomes]
rs7374671	0.86[EUR][1000 genomes]
rs7626249	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs762789	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634816	0.91[EUR][1000 genomes]
rs768539	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs963045	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9813756	0.90[EUR][1000 genomes]
rs9818053	0.91[EUR][1000 genomes]
rs9852052	0.89[EUR][1000 genomes]
rs9856098	0.91[EUR][1000 genomes]
rs9875668	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46387200-46390200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links