Variant report

Variant	rs6441963
Chromosome Location	chr3:46354839-46354840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:46354281-46355155	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr3:46354501-46354951	MCF10A-Er-Src	breast:	n/a	chr3:46354615-46354624
3	ELK1	chr3:46354761-46354871	Hela-S3	cervix:	n/a	n/a
4	CEBPB	chr3:46354574-46354845	K562	blood:	n/a	chr3:46354701-46354712
5	EP300	chr3:46354449-46355076	T-47D	breast:	n/a	n/a
6	STAT3	chr3:46354481-46354861	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr3:46354460-46354880	HL-60	blood:	n/a	n/a
8	STAT3	chr3:46354046-46355030	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr3:46354352-46354995	MCF10A-Er-Src	breast:	n/a	chr3:46354615-46354624
10	ESR1	chr3:46354629-46354992	T-47D	breast:	n/a	n/a
11	STAT3	chr3:46354281-46354998	MCF10A-Er-Src	breast:	n/a	n/a
12	MAX	chr3:46354551-46354862	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr3:46354342-46354953	HL-60	blood:	n/a	n/a
14	CEBPB	chr3:46354458-46354965	MCF-7	breast:	n/a	chr3:46354701-46354712
15	FOS	chr3:46354399-46354894	MCF10A-Er-Src	breast:	n/a	chr3:46354615-46354624
16	POLR2A	chr3:46354183-46354841	MCF10A-Er-Src	breast:	n/a	n/a
17	MYC	chr3:46354354-46355114	MCF10A-Er-Src	breast:	n/a	n/a
18	CEBPB	chr3:46354537-46354909	MCF-7	breast:	n/a	chr3:46354701-46354712
19	EP300	chr3:46354468-46355073	T-47D	breast:	n/a	n/a
20	MYC	chr3:46354494-46354965	MCF10A-Er-Src	breast:	n/a	n/a
21	STAT3	chr3:46354303-46355089	MCF10A-Er-Src	breast:	n/a	n/a
22	SPI1	chr3:46354368-46354902	HL-60	blood:	n/a	n/a
23	GATA3	chr3:46354481-46355087	T-47D	breast:	n/a	n/a
24	FOXA1	chr3:46354602-46355033	T-47D	breast:	n/a	n/a
25	FOS	chr3:46354334-46355017	MCF10A-Er-Src	breast:	n/a	chr3:46354615-46354624
26	FOXA1	chr3:46354544-46355043	T-47D	breast:	n/a	n/a
27	MYC	chr3:46354505-46354841	NB4	blood:	n/a	n/a
28	GATA3	chr3:46354463-46355116	T-47D	breast:	n/a	n/a
29	CEBPB	chr3:46354478-46354905	Hela-S3	cervix:	n/a	chr3:46354701-46354712
30	JUND	chr3:46354451-46355220	T-47D	breast:	n/a	chr3:46354615-46354624
31	MAFK	chr3:46354785-46354900	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
UQCRC2P1	TF binding region

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10865940	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11130089	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11711054	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13084656	0.85[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs13096142	0.85[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap]
rs1388604	0.90[JPT][hapmap]
rs1799865	0.88[CEU][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap]
rs2097282	0.80[ASN][1000 genomes]
rs2157057	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2157058	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2157059	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2187669	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2187670	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2213291	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2213292	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3092962	0.81[JPT][hapmap]
rs3092963	0.88[CEU][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap]
rs34148191	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34193387	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34505903	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34997146	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35053103	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35465430	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35510257	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35675823	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35971655	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs36030342	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs36048784	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3762823	0.81[JPT][hapmap]
rs3918358	0.88[CEU][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap]
rs4134396	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4683198	0.87[ASN][1000 genomes]
rs4683211	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4683215	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4683218	0.80[ASN][1000 genomes]
rs62244813	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62244827	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62244828	0.81[ASN][1000 genomes]
rs62244840	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62244848	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6441950	0.90[JPT][hapmap]
rs6441953	0.87[ASN][1000 genomes]
rs6441958	0.82[ASN][1000 genomes]
rs6441959	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6441960	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6441961	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6441962	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6441964	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6441971	0.81[JPT][hapmap]
rs6767895	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6771900	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6775208	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6783993	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6785878	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6788723	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6794300	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs71615444	0.86[ASN][1000 genomes]
rs7371987	0.90[JPT][hapmap]
rs7372094	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7374654	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7374671	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7432080	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7612940	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7626249	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7634816	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7635588	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs963045	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9813756	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9818053	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9842716	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs9852052	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9853223	0.85[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs9856098	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9875668	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46350800-46367600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46352400-46355600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr3:46352600-46358000	Weak transcription	Spleen	Spleen
4	chr3:46353800-46355000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:46353800-46355000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:46353800-46355600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:46354000-46356800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:46354400-46355000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:46354400-46356000	Weak transcription	Primary B cells from cord blood	blood

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