Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:46268227..46270497-chr3:46275042..46277907,2	MCF-7	breast:
2	chr3:46256291..46259076-chr3:46275985..46278352,2	K562	blood:
3	chr3:46269063..46271111-chr3:46276199..46278467,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13084656	0.90[JPT][hapmap];0.82[YRI][hapmap]
rs13096142	0.90[JPT][hapmap]
rs1979672	0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs36118141	0.88[ASN][1000 genomes]
rs41276529	0.90[ASN][1000 genomes]
rs41418050	0.91[ASN][1000 genomes]
rs41502550	0.91[ASN][1000 genomes]
rs4683194	0.91[ASN][1000 genomes]
rs4683199	0.89[ASN][1000 genomes]
rs6441950	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6441963	0.90[JPT][hapmap]
rs6788849	0.91[ASN][1000 genomes]
rs6793850	0.83[AFR][1000 genomes]
rs6810232	0.89[ASN][1000 genomes]
rs71327045	0.93[ASN][1000 genomes]
rs7371987	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9839623	0.89[ASN][1000 genomes]
rs9840204	0.87[ASN][1000 genomes]
rs9842716	0.86[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs9853223	0.90[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs9877860	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46271200-46277600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:46273800-46278600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr3:46274200-46277800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:46274800-46277000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:46275400-46277600	Weak transcription	Placenta	Placenta
6	chr3:46275400-46277600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:46275600-46277200	Weak transcription	Spleen	Spleen
8	chr3:46275600-46277600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:46276400-46278000	Enhancers	Fetal Thymus	thymus
10	chr3:46276600-46277000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:46276600-46277000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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