Variant report

Variant	rs71327045
Chromosome Location	chr3:46281578-46281579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr3:46281486-46281736	H1-hESC	embryonic stem cell:	n/a	n/a
2	USF1	chr3:46281369-46281807	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
CCR3	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13081325	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13096142	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1388604	0.93[ASN][1000 genomes]
rs1979672	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2040389	0.82[EUR][1000 genomes]
rs2040390	0.81[EUR][1000 genomes]
rs2097283	0.81[EUR][1000 genomes]
rs2157058	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2187669	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2187670	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2213288	0.81[EUR][1000 genomes]
rs34997146	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35510257	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36048784	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36118141	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41276529	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41418050	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41502550	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682812	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4683194	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4683199	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4683211	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4683215	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4683218	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62244813	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6441950	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441958	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6441959	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6441960	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6783993	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6788849	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6802288	0.80[AFR][1000 genomes]
rs6810232	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7371987	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7432080	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7612940	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7635588	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9839623	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9840204	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9877860	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46278400-46282600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:46278400-46283600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:46278600-46281800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:46278600-46282200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:46278600-46282800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:46278600-46283400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:46278600-46283400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:46280400-46281600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:46280600-46281600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:46280800-46281600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:46280800-46281600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:46281000-46281600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:46281000-46281600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:46281000-46281600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:46281000-46281600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:46281000-46281600	Enhancers	HMEC	breast
17	chr3:46281000-46281800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr3:46281000-46282000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:46281200-46281600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:46281200-46282000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:46281200-46282400	Enhancers	Fetal Heart	heart
22	chr3:46281400-46282200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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