Variant report

Variant	rs13081325
Chromosome Location	chr3:46288370-46288371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs36118141	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41276529	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41418050	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41502550	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4683194	0.89[EUR][1000 genomes]
rs4683199	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4683211	0.81[EUR][1000 genomes]
rs6441950	0.89[EUR][1000 genomes]
rs6441958	0.86[EUR][1000 genomes]
rs6441959	0.86[EUR][1000 genomes]
rs6783993	0.81[EUR][1000 genomes]
rs6788849	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6810232	0.89[EUR][1000 genomes]
rs71327045	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7371987	0.89[EUR][1000 genomes]
rs7635588	0.81[EUR][1000 genomes]
rs9839623	0.89[EUR][1000 genomes]
rs9840204	0.89[EUR][1000 genomes]
rs9877860	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46281600-46288600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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