Variant report

Variant	rs11923982
Chromosome Location	chr3:70068510-70068511
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10510994	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12489811	0.81[ASN][1000 genomes]
rs12495615	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12496787	0.81[ASN][1000 genomes]
rs1491694	0.81[ASN][1000 genomes]
rs1491697	0.81[ASN][1000 genomes]
rs1491700	0.86[AMR][1000 genomes]
rs17729465	0.81[AMR][1000 genomes]
rs17729489	0.85[AMR][1000 genomes]
rs17785152	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17785756	0.85[AMR][1000 genomes]
rs28462307	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2874269	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3849467	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4293707	0.85[AMR][1000 genomes]
rs4855334	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4855335	0.85[AMR][1000 genomes]
rs55966844	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58166970	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60251138	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60403843	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60647884	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6763730	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6799525	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7431273	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7611660	0.83[AMR][1000 genomes]
rs7619924	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7632596	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7645353	0.86[AMR][1000 genomes]
rs7649560	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9310181	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9815027	0.87[AMR][1000 genomes]
rs9818798	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9826811	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9837453	0.88[AMR][1000 genomes]
rs9840951	0.80[AMR][1000 genomes]
rs9843867	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9856462	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2763277	chr3:70065528-70074892	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11923982	RP11-460N16.1	cis	Artery Aorta	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70063800-70098000	Weak transcription	Aorta	Aorta
2	chr3:70068000-70069600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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