Variant report

Variant	rs7611660
Chromosome Location	chr3:70045438-70045439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10510994	0.90[EUR][1000 genomes]
rs11923982	0.83[AMR][1000 genomes]
rs12495615	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1491694	0.81[CHB][hapmap];0.83[YRI][hapmap]
rs17729465	0.80[EUR][1000 genomes]
rs17785152	0.84[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17785756	0.84[CEU][hapmap];0.81[CHB][hapmap];0.86[YRI][hapmap]
rs28462307	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3849467	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4293707	0.89[EUR][1000 genomes]
rs55966844	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60251138	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60403843	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60647884	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6799525	0.84[CEU][hapmap];0.86[CHB][hapmap];0.90[YRI][hapmap];0.80[EUR][1000 genomes]
rs7431273	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7619924	0.84[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7632596	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7649560	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9815027	0.94[ASW][hapmap];0.84[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.84[LWK][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.90[YRI][hapmap]
rs9818798	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9826811	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9840951	0.81[EUR][1000 genomes]
rs9843867	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9856462	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7611660	RP11-460N16.1	cis	Artery Aorta	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70041200-70061000	Weak transcription	Aorta	Aorta
2	chr3:70041600-70047800	Weak transcription	Fetal Brain Male	brain
3	chr3:70045200-70046600	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:70045200-70048000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:70045400-70045600	Enhancers	Fetal Brain Female	brain

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