Variant report

Variant	rs11924030
Chromosome Location	chr3:79393560-79393561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11918447	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11918927	1.00[AMR][1000 genomes]
rs35266188	1.00[AMR][1000 genomes]
rs35331305	1.00[AMR][1000 genomes]
rs56964141	1.00[AMR][1000 genomes]
rs57205903	1.00[AMR][1000 genomes]
rs59567596	1.00[AMR][1000 genomes]
rs60322697	1.00[AMR][1000 genomes]
rs73848852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848855	1.00[AMR][1000 genomes]
rs73848865	1.00[AMR][1000 genomes]
rs73848866	1.00[AMR][1000 genomes]
rs73848871	1.00[AMR][1000 genomes]
rs73848875	1.00[AMR][1000 genomes]
rs73848877	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79392600-79393800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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