Variant report

Variant	rs56964141
Chromosome Location	chr3:79472797-79472798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11918927	1.00[AMR][1000 genomes]
rs11924030	1.00[AMR][1000 genomes]
rs35266188	1.00[AMR][1000 genomes]
rs35331305	1.00[AMR][1000 genomes]
rs57205903	1.00[AMR][1000 genomes]
rs59567596	1.00[AMR][1000 genomes]
rs60322697	1.00[AMR][1000 genomes]
rs73848852	1.00[AMR][1000 genomes]
rs73848855	1.00[AMR][1000 genomes]
rs73848865	1.00[AMR][1000 genomes]
rs73848866	1.00[AMR][1000 genomes]
rs73848871	1.00[AMR][1000 genomes]
rs73848875	1.00[AMR][1000 genomes]
rs73848877	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3381015	chr3:79425678-79545174	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998248	chr3:79426615-79554963	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834747	chr3:79441211-79591923	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79468800-79473200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:79472200-79472800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:79472400-79473600	Weak transcription	Fetal Heart	heart
4	chr3:79472600-79474400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:79472600-79475000	Enhancers	HMEC	breast
6	chr3:79472600-79475000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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