Variant report
| Variant | rs11925180 |
|---|---|
| Chromosome Location | chr3:19217437-19217438 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:19216852..19218561-chr3:19219870..19222636,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:56)
| rs_ID | r2[population] |
|---|---|
| rs11914725 | 1.00[CEU][hapmap] |
| rs11915614 | 1.00[CEU][hapmap] |
| rs11915915 | 1.00[CEU][hapmap] |
| rs11917497 | 1.00[CEU][hapmap] |
| rs11917668 | 1.00[CEU][hapmap] |
| rs11918112 | 1.00[CEU][hapmap] |
| rs11918147 | 1.00[CEU][hapmap] |
| rs11918308 | 1.00[CEU][hapmap] |
| rs11918533 | 1.00[CEU][hapmap] |
| rs11918685 | 1.00[CEU][hapmap] |
| rs11919461 | 1.00[CEU][hapmap] |
| rs11922330 | 1.00[CEU][hapmap] |
| rs11923068 | 1.00[CEU][hapmap] |
| rs11923157 | 1.00[CEU][hapmap] |
| rs11923699 | 1.00[CEU][hapmap] |
| rs11924695 | 1.00[CEU][hapmap] |
| rs11925510 | 1.00[CEU][hapmap] |
| rs11926160 | 1.00[CEU][hapmap] |
| rs11926703 | 1.00[CEU][hapmap] |
| rs11927110 | 1.00[CEU][hapmap] |
| rs11927919 | 1.00[CEU][hapmap] |
| rs11929014 | 1.00[CEU][hapmap] |
| rs12108002 | 1.00[CEU][hapmap] |
| rs1493925 | 1.00[CEU][hapmap] |
| rs17005744 | 1.00[CEU][hapmap] |
| rs17005761 | 1.00[CEU][hapmap] |
| rs17005762 | 1.00[CEU][hapmap];0.88[YRI][hapmap] |
| rs17005767 | 1.00[CEU][hapmap] |
| rs17005770 | 1.00[CEU][hapmap] |
| rs17005771 | 1.00[CEU][hapmap] |
| rs17005800 | 1.00[CEU][hapmap] |
| rs17005811 | 1.00[CEU][hapmap] |
| rs1901008 | 1.00[CEU][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs2122380 | 1.00[CEU][hapmap] |
| rs2363094 | 1.00[CEU][hapmap] |
| rs2363095 | 1.00[CEU][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6769519 | 1.00[CEU][hapmap] |
| rs6783211 | 1.00[CEU][hapmap] |
| rs7427695 | 1.00[CEU][hapmap] |
| rs7433172 | 1.00[CEU][hapmap] |
| rs7613079 | 1.00[CEU][hapmap] |
| rs7625953 | 1.00[CEU][hapmap] |
| rs7626630 | 1.00[CEU][hapmap] |
| rs7628012 | 1.00[CEU][hapmap] |
| rs7629339 | 1.00[CEU][hapmap] |
| rs7632339 | 1.00[CEU][hapmap] |
| rs7634126 | 1.00[CEU][hapmap] |
| rs7636919 | 1.00[CEU][hapmap] |
| rs7639506 | 1.00[CEU][hapmap] |
| rs7641298 | 1.00[CEU][hapmap] |
| rs7643919 | 1.00[CEU][hapmap] |
| rs7645122 | 1.00[CEU][hapmap] |
| rs7647965 | 1.00[CEU][hapmap] |
| rs7652572 | 1.00[CEU][hapmap] |
| rs9755604 | 1.00[CEU][hapmap] |
| rs9756893 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv517847 | chr3:18845347-19483695 | Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010123 | chr3:18990307-19989504 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004602 | chr3:19031671-19930052 | Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv536511 | chr3:19031671-19930052 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:19214200-19219800 | Weak transcription | Brain Cingulate Gyrus | brain |
| 2 | chr3:19214600-19217600 | Weak transcription | Brain Hippocampus Middle | brain |
| 3 | chr3:19216000-19225000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 4 | chr3:19217400-19217600 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 5 | chr3:19217400-19217800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 6 | chr3:19217400-19218600 | Enhancers | Brain Substantia Nigra | brain |
