Variant report

Variant	rs11926160
Chromosome Location	chr3:19267984-19267985
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs11914359	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11914411	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11914725	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11915614	1.00[CEU][hapmap]
rs11915915	1.00[CEU][hapmap]
rs11917497	1.00[CEU][hapmap]
rs11917668	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11918112	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[MKK][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11918147	1.00[CEU][hapmap]
rs11918308	1.00[CEU][hapmap]
rs11918475	0.97[AFR][1000 genomes]
rs11918533	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11918685	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[MKK][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11919461	1.00[CEU][hapmap]
rs11920737	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922065	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922330	1.00[CEU][hapmap]
rs11923068	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923157	1.00[CEU][hapmap];0.88[LWK][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923699	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs11924695	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes]
rs11925180	1.00[CEU][hapmap]
rs11925510	1.00[CEU][hapmap]
rs11925978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11926139	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11926638	0.95[AFR][1000 genomes]
rs11926703	1.00[CEU][hapmap]
rs11927110	1.00[CEU][hapmap]
rs11927892	0.97[AFR][1000 genomes]
rs11927919	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11927932	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929014	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12107999	0.95[AFR][1000 genomes]
rs12108002	1.00[CEU][hapmap]
rs1493925	1.00[CEU][hapmap]
rs17005744	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005761	1.00[CEU][hapmap]
rs17005762	1.00[CEU][hapmap]
rs17005767	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes]
rs17005770	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005771	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005800	1.00[CEU][hapmap]
rs17005811	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs1901008	1.00[CEU][hapmap]
rs2047114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2122380	1.00[CEU][hapmap]
rs2363094	1.00[CEU][hapmap]
rs2363095	1.00[CEU][hapmap]
rs28412409	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28695535	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34182590	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56751850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56837808	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57014064	0.97[AFR][1000 genomes]
rs57104291	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57610409	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57735869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977512	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58432712	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58513956	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59046749	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59107989	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59618440	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59766102	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59995793	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60043706	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60067149	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60257203	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60315709	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61132235	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61169657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61293006	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6769519	1.00[CEU][hapmap]
rs6783211	1.00[CEU][hapmap]
rs7427253	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7427695	1.00[CEU][hapmap]
rs7427756	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7433172	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610439	0.87[AFR][1000 genomes]
rs7610550	0.97[AFR][1000 genomes]
rs7613079	1.00[CEU][hapmap]
rs7625953	1.00[CEU][hapmap]
rs7626630	1.00[CEU][hapmap]
rs7628012	1.00[CEU][hapmap]
rs7629339	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes]
rs7632339	1.00[CEU][hapmap]
rs7634126	1.00[CEU][hapmap]
rs7634160	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7636919	1.00[CEU][hapmap]
rs7639506	1.00[CEU][hapmap]
rs7641298	1.00[CEU][hapmap]
rs7643919	1.00[CEU][hapmap]
rs7644590	0.97[AFR][1000 genomes]
rs7645122	1.00[CEU][hapmap]
rs7647965	1.00[CEU][hapmap]
rs7652572	1.00[CEU][hapmap]
rs7652959	0.89[AMR][1000 genomes]
rs7652964	0.89[AMR][1000 genomes]
rs9755604	1.00[CEU][hapmap]
rs9756893	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517847	chr3:18845347-19483695	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010123	chr3:18990307-19989504	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1004602	chr3:19031671-19930052	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv536511	chr3:19031671-19930052	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv524040	chr3:19266335-19269852	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:19255600-19268000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:19258600-19273200	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:19262400-19286200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:19262800-19272200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:19263000-19268000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:19267400-19268600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:19267800-19268200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:19267800-19268600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:19267800-19268600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:19267800-19268600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:19267800-19268600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:19267800-19268600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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