Variant report

Variant	rs11926638
Chromosome Location	chr3:19303136-19303137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11914725	0.92[AFR][1000 genomes]
rs11918475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923068	0.89[AFR][1000 genomes]
rs11923157	0.89[AFR][1000 genomes]
rs11923699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11925978	0.92[AFR][1000 genomes]
rs11926139	0.92[AFR][1000 genomes]
rs11926160	0.95[AFR][1000 genomes]
rs11927892	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11927919	0.85[AFR][1000 genomes]
rs11927932	0.92[AFR][1000 genomes]
rs12107999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005744	0.89[AFR][1000 genomes]
rs17005770	0.83[AFR][1000 genomes]
rs17005771	0.95[AFR][1000 genomes]
rs2047114	0.92[AFR][1000 genomes]
rs34182590	0.92[AFR][1000 genomes]
rs56751850	0.92[AFR][1000 genomes]
rs57014064	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57610409	0.92[AFR][1000 genomes]
rs57735869	0.95[AFR][1000 genomes]
rs57977512	0.89[AFR][1000 genomes]
rs58432712	0.92[AFR][1000 genomes]
rs58513956	0.89[AFR][1000 genomes]
rs59046749	0.89[AFR][1000 genomes]
rs59766102	0.89[AFR][1000 genomes]
rs59995793	0.86[AFR][1000 genomes]
rs60067149	0.83[AFR][1000 genomes]
rs61169657	0.89[AFR][1000 genomes]
rs61293006	0.89[AFR][1000 genomes]
rs7427253	0.89[AFR][1000 genomes]
rs7427756	0.92[AFR][1000 genomes]
rs7433172	0.92[AFR][1000 genomes]
rs7610439	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610550	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634160	0.81[AFR][1000 genomes]
rs7644590	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517847	chr3:18845347-19483695	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010123	chr3:18990307-19989504	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1004602	chr3:19031671-19930052	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv536511	chr3:19031671-19930052	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv3366090	chr3:19300198-19304796	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv3377413	chr3:19300598-19304696	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:19293200-19305600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:19296800-19307200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:19300000-19324200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:19300800-19309800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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