Variant report

Variant	rs11925650
Chromosome Location	chr3:145916318-145916319
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13073184	0.87[EUR][1000 genomes]
rs13086427	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1398527	0.87[EUR][1000 genomes]
rs6808115	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145895800-145918200	Weak transcription	NHDF-Ad	bronchial
2	chr3:145897000-145933600	Weak transcription	Fetal Stomach	stomach
3	chr3:145899600-145917400	Weak transcription	Pancreas	Pancrea
4	chr3:145901000-145923800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:145902800-145923000	Weak transcription	Osteobl	bone
6	chr3:145902800-145923600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:145903000-145934800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:145905000-145933600	Weak transcription	NHLF	lung
9	chr3:145907000-145938600	Weak transcription	Fetal Intestine Small	intestine
10	chr3:145907400-145918200	Weak transcription	HepG2	liver
11	chr3:145907600-145939200	Weak transcription	Brain Anterior Caudate	brain
12	chr3:145908200-145936400	Weak transcription	A549	lung
13	chr3:145908400-145917400	Weak transcription	Ovary	ovary
14	chr3:145909600-145939200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:145910400-145932400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:145910400-145940000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:145912200-145923800	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:145912600-145923600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:145913000-145917000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:145913000-145917000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:145913200-145920200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr3:145913200-145920600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:145913200-145923200	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:145913400-145920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:145913800-145916800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:145913800-145917000	Weak transcription	HSMMtube	muscle
27	chr3:145913800-145939200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr3:145914000-145923400	Weak transcription	Fetal Intestine Large	intestine
29	chr3:145914200-145920200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:145914200-145937000	Weak transcription	Placenta	Placenta
31	chr3:145914600-145940200	Weak transcription	Gastric	stomach
32	chr3:145914800-145917000	Weak transcription	Liver	Liver
33	chr3:145914800-145917000	Weak transcription	Fetal Heart	heart
34	chr3:145914800-145917400	Weak transcription	Adipose Nuclei	Adipose
35	chr3:145914800-145917400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr3:145914800-145918200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:145914800-145919200	Weak transcription	Left Ventricle	heart
38	chr3:145914800-145924200	Weak transcription	Aorta	Aorta
39	chr3:145914800-145940200	Weak transcription	Psoas Muscle	Psoas
40	chr3:145914800-145940400	Weak transcription	Spleen	Spleen
41	chr3:145915200-145917000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:145915200-145917000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:145915200-145917000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:145915200-145917400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:145915800-145917800	Strong transcription	Fetal Lung	lung
46	chr3:145916200-145916400	Enhancers	Esophagus	oesophagus
47	chr3:145916200-145917000	Weak transcription	HUVEC	blood vessel

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