Variant report

Variant	rs11927251
Chromosome Location	chr3:112844003-112844004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11920693	1.00[JPT][hapmap]
rs11921226	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11923543	1.00[JPT][hapmap]
rs11924319	1.00[JPT][hapmap]
rs11925140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638736	0.82[JPT][hapmap]
rs16860542	1.00[CHB][hapmap]
rs6802665	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112840600-112846800	Weak transcription	Fetal Stomach	stomach
2	chr3:112842800-112845600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:112843000-112844200	Enhancers	Fetal Thymus	thymus
4	chr3:112843200-112847200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:112843400-112847000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:112843400-112851200	Weak transcription	NHEK	skin
7	chr3:112843600-112847000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:112843800-112846800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:112843800-112847000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:112843800-112847000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:112843800-112847000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:112844000-112844200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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