Variant report

Variant	rs11928649
Chromosome Location	chr3:111282564-111282565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11928364	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16858218	0.85[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16858221	0.86[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16858237	0.85[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16858238	1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16858274	0.85[JPT][hapmap]
rs16858277	0.85[JPT][hapmap]
rs16858280	0.85[JPT][hapmap]
rs2276872	0.85[JPT][hapmap]
rs57590158	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58906230	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs721335	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852803	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73855136	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855137	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855138	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855139	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855140	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855144	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73855145	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7629206	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs981953	0.85[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs981954	0.85[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs981955	0.85[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv3946	chr3:111236035-111283038	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv433354	chr3:111281864-111284561	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111269800-111289200	Weak transcription	Thymus	Thymus
2	chr3:111271600-111286000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:111271600-111286200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:111271600-111286600	Weak transcription	Fetal Thymus	thymus
5	chr3:111275000-111283800	Weak transcription	Dnd41	blood
6	chr3:111281000-111282800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:111281400-111285800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:111281600-111282600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:111281800-111283600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:111282000-111286200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr3:111282000-111286400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:111282200-111283400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:111282200-111283400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:111282200-111283600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:111282400-111282600	Weak transcription	Primary T cells from cord blood	blood
16	chr3:111282400-111283400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:111282400-111283400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:111282400-111283600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:111282400-111283600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links