Variant report

Variant	rs11931510
Chromosome Location	chr4:148642578-148642579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148641297..148643621-chr4:148651821..148654094,2	MCF-7	breast:
2	chr4:148640121..148643037-chr4:148653637..148655326,2	MCF-7	breast:
3	chr4:148641449..148643779-chr4:148649029..148651151,2	MCF-7	breast:
4	chr4:148638375..148640949-chr4:148641559..148643436,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071205	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10011891	1.00[AMR][1000 genomes]
rs10023419	1.00[AMR][1000 genomes]
rs10024194	0.83[AMR][1000 genomes]
rs10029636	1.00[AMR][1000 genomes]
rs10034181	1.00[AMR][1000 genomes]
rs11932755	0.83[AMR][1000 genomes]
rs11932883	0.83[AMR][1000 genomes]
rs28416885	1.00[AMR][1000 genomes]
rs28579791	1.00[AMR][1000 genomes]
rs34001293	0.83[AMR][1000 genomes]
rs57632432	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58012022	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58285779	0.83[AMR][1000 genomes]
rs58965352	1.00[AMR][1000 genomes]
rs59938265	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61312957	0.83[AMR][1000 genomes]
rs61355480	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61363583	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72945871	0.83[AMR][1000 genomes]
rs72945873	0.83[AMR][1000 genomes]
rs72945877	0.83[AMR][1000 genomes]
rs72945879	0.83[AMR][1000 genomes]
rs72945896	0.83[AMR][1000 genomes]
rs72947812	0.83[AMR][1000 genomes]
rs72947824	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947833	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947849	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947870	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947876	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947892	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72949789	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72949795	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72949796	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72949798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951406	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951423	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953473	1.00[AMR][1000 genomes]
rs72953477	1.00[AMR][1000 genomes]
rs72953481	1.00[AMR][1000 genomes]
rs72953487	0.83[AMR][1000 genomes]
rs72953502	1.00[AMR][1000 genomes]
rs72955506	1.00[AMR][1000 genomes]
rs9996365	1.00[AMR][1000 genomes]
rs9997304	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148635600-148646800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:148640400-148645800	Weak transcription	GM12878-XiMat	blood

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