Variant report

Variant	rs72949798
Chromosome Location	chr4:148627795-148627796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148616867..148618496-chr4:148626257..148629156,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10011891	1.00[AMR][1000 genomes]
rs10023419	1.00[AMR][1000 genomes]
rs10024194	0.83[AMR][1000 genomes]
rs10029636	1.00[AMR][1000 genomes]
rs10034181	1.00[AMR][1000 genomes]
rs11931510	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11932755	0.83[AMR][1000 genomes]
rs11932883	0.83[AMR][1000 genomes]
rs28416885	1.00[AMR][1000 genomes]
rs28579791	1.00[AMR][1000 genomes]
rs34001293	0.83[AMR][1000 genomes]
rs57632432	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58012022	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58285779	0.83[AMR][1000 genomes]
rs58965352	1.00[AMR][1000 genomes]
rs59938265	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61312957	0.83[AMR][1000 genomes]
rs61355480	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61363583	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72945871	0.83[AMR][1000 genomes]
rs72945873	0.83[AMR][1000 genomes]
rs72945877	0.83[AMR][1000 genomes]
rs72945879	0.83[AMR][1000 genomes]
rs72945896	0.83[AMR][1000 genomes]
rs72947812	0.83[AMR][1000 genomes]
rs72947824	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947833	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947849	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947870	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947876	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72947892	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72949789	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72949795	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72949796	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72951406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951412	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951422	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951423	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953473	1.00[AMR][1000 genomes]
rs72953477	1.00[AMR][1000 genomes]
rs72953481	1.00[AMR][1000 genomes]
rs72953487	0.83[AMR][1000 genomes]
rs72953502	1.00[AMR][1000 genomes]
rs72955506	1.00[AMR][1000 genomes]
rs9996365	1.00[AMR][1000 genomes]
rs9997304	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148626000-148629200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:148627000-148630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:148627000-148634200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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