Variant report

Variant	rs11931750
Chromosome Location	chr4:96719807-96719808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10006978	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11097484	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930626	0.87[AFR][1000 genomes]
rs11931752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946552	0.83[EUR][1000 genomes]
rs1436561	0.85[AFR][1000 genomes]
rs17024535	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17024571	0.81[EUR][1000 genomes]
rs1836903	0.85[AFR][1000 genomes]
rs1836904	0.85[AFR][1000 genomes]
rs1961771	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2043654	0.81[EUR][1000 genomes]
rs2043655	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28516597	0.81[EUR][1000 genomes]
rs28841026	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4597837	0.81[EUR][1000 genomes]
rs56166497	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59407834	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs716720	0.81[EUR][1000 genomes]
rs72887505	0.84[AFR][1000 genomes]
rs72887506	0.84[AFR][1000 genomes]
rs72887509	0.82[AFR][1000 genomes]
rs72887510	0.81[AFR][1000 genomes]
rs72887518	0.84[AFR][1000 genomes]
rs72887519	0.84[AFR][1000 genomes]
rs72887522	0.84[AFR][1000 genomes]
rs72887550	0.85[AFR][1000 genomes]
rs72887578	0.87[AFR][1000 genomes]
rs73839603	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7655617	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7661333	0.85[AFR][1000 genomes]
rs7668426	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7681417	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7695350	0.85[AFR][1000 genomes]
rs9942151	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv428767	chr4:96676384-96831793	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96719200-96720000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:96719200-96720000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:96719200-96720600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:96719400-96720000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:96719400-96720000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:96719400-96720000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:96719400-96720400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:96719600-96721000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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