Variant report
| Variant | rs7681417 |
|---|---|
| Chromosome Location | chr4:96672472-96672473 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10006978 | 0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11097483 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11097484 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11931750 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11931752 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11946552 | 0.83[EUR][1000 genomes] |
| rs17024535 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17024571 | 0.85[EUR][1000 genomes] |
| rs1961771 | 0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2043654 | 0.85[EUR][1000 genomes] |
| rs2043655 | 0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28516597 | 0.85[EUR][1000 genomes] |
| rs28841026 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4597837 | 0.85[EUR][1000 genomes] |
| rs56166497 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59407834 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs716720 | 0.85[EUR][1000 genomes] |
| rs73839603 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73842171 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7655617 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7668426 | 0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830012 | chr4:96547783-96746163 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1844506 | chr4:96554889-96704333 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv997304 | chr4:96575198-96861349 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1010830 | chr4:96607025-96862878 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv537191 | chr4:96607025-96862878 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv594915 | chr4:96628653-97086618 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:96665800-96682200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr4:96666600-96682800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
