Variant report

Variant	rs11932803
Chromosome Location	chr4:44918770-44918771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10461062	0.93[AFR][1000 genomes]
rs11942097	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12502970	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13137802	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1496985	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1845948	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2132690	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2173106	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2348789	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6832063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6839948	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7659258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7661117	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7666456	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7684874	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7685827	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7690944	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9990760	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44918200-44918800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr4:44918200-44919200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:44918400-44918800	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr4:44918400-44918800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:44918400-44918800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:44918400-44918800	Active TSS	A549	lung
7	chr4:44918400-44918800	Active TSS	Monocytes-CD14+_RO01746	blood
8	chr4:44918400-44919000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:44918400-44919000	Active TSS	Brain Hippocampus Middle	brain
10	chr4:44918400-44919000	Active TSS	Brain Substantia Nigra	brain
11	chr4:44918400-44919000	Active TSS	Psoas Muscle	Psoas
12	chr4:44918400-44919000	Active TSS	Right Atrium	heart
13	chr4:44918400-44919000	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr4:44918400-44919000	Active TSS	HMEC	breast
15	chr4:44918400-44919000	Active TSS	NHDF-Ad	bronchial
16	chr4:44918400-44919200	Active TSS	Muscle Satellite Cultured Cells	--
17	chr4:44918400-44919200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:44918400-44919200	Active TSS	Aorta	Aorta
19	chr4:44918400-44919200	Active TSS	Brain Angular Gyrus	brain
20	chr4:44918400-44919200	Active TSS	Brain Anterior Caudate	brain
21	chr4:44918400-44919200	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr4:44918400-44919200	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr4:44918400-44919200	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr4:44918400-44919400	Active TSS	Stomach Smooth Muscle	stomach
25	chr4:44918600-44919000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:44918600-44919000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:44918600-44919000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:44918600-44919000	Active TSS	Colon Smooth Muscle	Colon
29	chr4:44918600-44919000	Active TSS	Hela-S3	cervix
30	chr4:44918600-44919000	Active TSS	HSMMtube	muscle
31	chr4:44918600-44919200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:44918600-44919200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:44918600-44919200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr4:44918600-44919200	Active TSS	Brain Cingulate Gyrus	brain
35	chr4:44918600-44919200	Active TSS	Ovary	ovary
36	chr4:44918600-44919200	Active TSS	Rectal Smooth Muscle	rectum
37	chr4:44918600-44919200	Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links