Variant report

Variant	rs1496985
Chromosome Location	chr4:44920423-44920424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:44916382..44918231-chr4:44919959..44921633,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1116272	0.88[AFR][1000 genomes]
rs11932803	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11942097	0.86[EUR][1000 genomes]
rs12502970	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13137802	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1390919	0.88[AFR][1000 genomes]
rs1472395	0.88[AFR][1000 genomes]
rs1496982	0.88[AFR][1000 genomes]
rs1496984	0.86[AFR][1000 genomes]
rs1496995	0.88[AFR][1000 genomes]
rs1497001	0.90[AFR][1000 genomes]
rs1497012	0.85[AFR][1000 genomes]
rs1845948	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1845950	0.89[AFR][1000 genomes]
rs1845951	0.88[AFR][1000 genomes]
rs2132690	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2173106	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2348789	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6832063	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6839948	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7653979	0.88[AFR][1000 genomes]
rs7659258	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7661005	0.90[AFR][1000 genomes]
rs7661117	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7666456	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7684874	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7685827	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7690764	0.89[AFR][1000 genomes]
rs7690944	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9291252	0.89[AFR][1000 genomes]
rs9291253	0.89[AFR][1000 genomes]
rs9990760	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9995550	0.90[AFR][1000 genomes]
rs9998147	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44919200-44928400	Weak transcription	Psoas Muscle	Psoas
2	chr4:44920400-44921000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links