Variant report

Variant	rs11933090
Chromosome Location	chr4:20446190-20446191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1323063	0.92[CEU][hapmap]
rs16869609	0.92[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16869615	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55680386	0.84[EUR][1000 genomes]
rs73238791	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73238796	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73250370	0.85[EUR][1000 genomes]
rs73250380	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878741	chr4:20440476-20486230	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20444000-20449000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:20444200-20446600	Enhancers	Fetal Stomach	stomach
3	chr4:20444200-20449600	Enhancers	Fetal Lung	lung
4	chr4:20444400-20446800	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:20444800-20447600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:20445200-20447000	Weak transcription	NHDF-Ad	bronchial
7	chr4:20445600-20447400	Weak transcription	Fetal Kidney	kidney
8	chr4:20445800-20446200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:20446000-20446200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:20446000-20446600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:20446000-20446600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:20446000-20446800	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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