Variant report

Variant	rs16869615
Chromosome Location	chr4:20454884-20454885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11933090	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1323063	0.91[CEU][hapmap]
rs16869609	0.92[CEU][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55680386	0.86[EUR][1000 genomes]
rs73238750	0.81[EUR][1000 genomes]
rs73238791	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73238796	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73250370	0.87[EUR][1000 genomes]
rs73250380	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878741	chr4:20440476-20486230	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv527095	chr4:20447040-20455955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20447800-20457800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:20448000-20456600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:20448800-20457600	Weak transcription	NHDF-Ad	bronchial
4	chr4:20449600-20486000	Weak transcription	Fetal Lung	lung
5	chr4:20454400-20455200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:20454600-20457800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:20454800-20457600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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