Variant report

Variant	rs73238750
Chromosome Location	chr4:20359286-20359287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1323063	0.89[EUR][1000 genomes]
rs16869615	0.81[EUR][1000 genomes]
rs55680386	0.92[EUR][1000 genomes]
rs73234450	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73234452	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73234453	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73234458	0.93[EUR][1000 genomes]
rs73234462	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73234469	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73238791	0.93[EUR][1000 genomes]
rs73238796	0.93[EUR][1000 genomes]
rs73250370	0.93[EUR][1000 genomes]
rs73250380	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20353400-20369200	Weak transcription	Pancreas	Pancrea
2	chr4:20353600-20369200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:20354400-20359400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:20354800-20359600	Weak transcription	NHEK	skin
6	chr4:20356200-20363800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:20357000-20368400	Weak transcription	NHDF-Ad	bronchial
8	chr4:20357000-20369000	Weak transcription	Osteobl	bone
9	chr4:20358400-20359800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:20358400-20368200	Weak transcription	NHLF	lung
11	chr4:20358600-20366800	Weak transcription	Fetal Lung	lung
12	chr4:20358600-20371000	Weak transcription	Brain Anterior Caudate	brain
13	chr4:20358800-20365400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:20359000-20363600	Weak transcription	Brain Angular Gyrus	brain
15	chr4:20359000-20363600	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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