Variant report

Variant	rs73234469
Chromosome Location	chr4:20345175-20345176
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1323063	0.93[EUR][1000 genomes]
rs55680386	0.88[EUR][1000 genomes]
rs73234450	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73234452	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73234453	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73234458	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73234462	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73238750	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73238791	0.89[EUR][1000 genomes]
rs73238796	0.89[EUR][1000 genomes]
rs73250370	0.89[EUR][1000 genomes]
rs73250380	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20329000-20350200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:20329200-20348800	Weak transcription	NHDF-Ad	bronchial
3	chr4:20339200-20353000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:20342600-20347800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:20343400-20355400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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