Variant report

Variant	rs11933748
Chromosome Location	chr4:26275139-26275140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26273779..26276561-chr4:26318606..26321595,2	MCF-7	breast:
2	chr17:43128930..43129672-chr4:26274745..26275671,2	NB4	blood:

Variant related genes	Relation type
ENSG00000136448	Chromatin interaction
ENSG00000168214	Chromatin interaction
ENSG00000172992	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16878233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73114545	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26266400-26289000	Weak transcription	Right Atrium	heart
2	chr4:26274200-26275200	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:26274200-26277600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr4:26274400-26275200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr4:26274400-26275200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:26274400-26275200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:26274400-26275200	Enhancers	Brain Angular Gyrus	brain
8	chr4:26274400-26275200	Enhancers	Stomach Smooth Muscle	stomach
9	chr4:26274400-26275400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:26274400-26275400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:26274400-26275400	Enhancers	Rectal Smooth Muscle	rectum
12	chr4:26274400-26275600	Enhancers	Colon Smooth Muscle	Colon
13	chr4:26274400-26275600	Enhancers	GM12878-XiMat	blood
14	chr4:26274400-26276000	Enhancers	Fetal Brain Male	brain
15	chr4:26274400-26277400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr4:26274600-26275200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr4:26274600-26275400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr4:26274600-26275400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:26274600-26275400	Enhancers	Fetal Lung	lung
20	chr4:26274600-26275800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr4:26274600-26276000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:26274600-26277200	Active TSS	Primary B cells from cord blood	blood
23	chr4:26274800-26275200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:26274800-26275400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:26274800-26275400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr4:26274800-26275400	Enhancers	Adipose Nuclei	Adipose
27	chr4:26274800-26275400	Enhancers	Fetal Stomach	stomach
28	chr4:26274800-26275600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr4:26274800-26276400	Enhancers	Fetal Thymus	thymus
30	chr4:26275000-26275200	Enhancers	Brain Hippocampus Middle	brain
31	chr4:26275000-26275400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr4:26275000-26275400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr4:26275000-26275400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:26275000-26275400	Weak transcription	Primary T cells from cord blood	blood
35	chr4:26275000-26275400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr4:26275000-26275400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:26275000-26275400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:26275000-26275400	Enhancers	Placenta	Placenta
39	chr4:26275000-26275400	Enhancers	Lung	lung
40	chr4:26275000-26275400	Enhancers	Thymus	Thymus
41	chr4:26275000-26275600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr4:26275000-26275600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr4:26275000-26275600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:26275000-26275600	Enhancers	Esophagus	oesophagus
45	chr4:26275000-26275600	Enhancers	Fetal Muscle Leg	muscle
46	chr4:26275000-26275800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
47	chr4:26275000-26276200	Enhancers	Fetal Muscle Trunk	muscle
48	chr4:26275000-26276600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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