Variant report

Variant	rs16878236
Chromosome Location	chr4:26275447-26275448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26273779..26276561-chr4:26318606..26321595,2	MCF-7	breast:
2	chr17:43128930..43129672-chr4:26274745..26275671,2	NB4	blood:

Variant related genes	Relation type
ENSG00000172992	Chromatin interaction
ENSG00000168214	Chromatin interaction
ENSG00000136448	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11933748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16878233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73114543	0.85[ASN][1000 genomes]
rs73114545	0.89[ASN][1000 genomes]
rs7671350	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26266400-26289000	Weak transcription	Right Atrium	heart
2	chr4:26274200-26277600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr4:26274400-26275600	Enhancers	Colon Smooth Muscle	Colon
4	chr4:26274400-26275600	Enhancers	GM12878-XiMat	blood
5	chr4:26274400-26276000	Enhancers	Fetal Brain Male	brain
6	chr4:26274400-26277400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr4:26274600-26275800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr4:26274600-26276000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:26274600-26277200	Active TSS	Primary B cells from cord blood	blood
10	chr4:26274800-26275600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr4:26274800-26276400	Enhancers	Fetal Thymus	thymus
12	chr4:26275000-26275600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:26275000-26275600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:26275000-26275600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:26275000-26275600	Enhancers	Esophagus	oesophagus
16	chr4:26275000-26275600	Enhancers	Fetal Muscle Leg	muscle
17	chr4:26275000-26275800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
18	chr4:26275000-26276200	Enhancers	Fetal Muscle Trunk	muscle
19	chr4:26275000-26276600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr4:26275200-26275800	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr4:26275200-26279200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:26275200-26280000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:26275200-26281800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:26275400-26275600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr4:26275400-26275600	Enhancers	Primary T cells from cord blood	blood
26	chr4:26275400-26276400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:26275400-26276600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:26275400-26283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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